POPTR_0017s04820 (Populus trichocarpa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 POPTR_0017s04820 T222580_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-22
M02041_2.00 		Arabidopsis thaliana
NNATAATWWWNNN
NNNWWWATTATNN		 PBM
Weirauch et al.(2014)
pTH5883 		0.674 0.439
ATHB-51
M00867_2.00 		Arabidopsis thaliana
ATWATKNN
NNMATWAT		 PBM
Franco-Zorrilla et al.(2014)
ATHB51 		0.665 0.491
ATHB-51
M06927_2.00 		Arabidopsis thaliana
DNCAATAATTGAD
HTCAATTATTGNH		 Dap-seq
OMalley et al.(2016)
LMI1_col_a 		0.665 0.491
ATHB-51
M06928_2.00 		Arabidopsis thaliana
NDNCAATAATTGA
TCAATTATTGNHN		 Dap-seq
OMalley et al.(2016)
LMI1_colamp_a 		0.665 0.491
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.639 0.526
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.639 0.526
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.639 0.509
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.639 0.509
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0017s04820.1 Homeodomain 18 74

Links

Other Homeodomain family TFs
Other Populus trichocarpa TFs

163 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACYPI008958 Acyrthosiphon pisum ACYPI008958 N
AAEL009092 Aedes aegypti AAEL009092 N
Alligator_sinensis_CCG000180.1 Alligator sinensis Alligator_sinensis_CCG000180.1 N
AALB003420 Anopheles albimanus AALB003420 N
AARA002212 Anopheles arabiensis AARA002212 N
AATE002410 Anopheles atroparvus AATE002410 N
ACHR009221 Anopheles christyi ACHR009221 N
AEPI009380 Anopheles epiroticus AEPI009380 N
AFAF012002 Anopheles farauti AFAF012002 N
AGAP001761 Anopheles gambiae AGAP001761 N
AMEC017514 Anopheles melas AMEC017514 N
AMEM008456 Anopheles merus AMEM008456 N
AQUA000629 Anopheles quadriannulatus AQUA000629 N
Afo_R008528 Aptenodytes forsteri Afo_R008528 N
estExt_gwp.C_860189 Branchiostoma floridae estExt_gwp.C_860189 N
e_gw.479.83.1 Branchiostoma floridae e_gw.479.83.1 N
Cflo_01607--XP_001123059.1_APIME Camponotus floridanus Cflo_01607--XP_001123059.1_APIME N
CLEC001936 Cimex lectularius CLEC001936 N
CpipJ_CPIJ012963 Culex pipiens CpipJ_CPIJ012963 N
CPIJ012963 Culex quinquefasciatus CPIJ012963 N
KGM_16996 Danaus plexippus KGM_16996 N
KGM_15429 Danaus plexippus KGM_15429 N
YQE_11876 Dendroctonus ponderosae YQE_11876 N
ENSGACG00000002760 Gasterosteus aculeatus ENSGACG00000002760 N
HHAL005214-PA Halyomorpha halys HHAL005214-PA N
Hsal_14209--XP_001123059.1_APIME Harpegnathos saltator Hsal_14209--XP_001123059.1_APIME N
HMEL006147 Heliconius melpomene HMEL006147 N
HelroG82517 Helobdella robusta HelroG82517 N
ENSLOCG00000004390 Lepisosteus oculatus ENSLOCG00000004390 N
LDEC003623 Leptinotarsa decemlineata LDEC003623 N
MCINX005366 Melitaea cinxia MCINX005366 N
MCINX005367 Melitaea cinxia MCINX005367 N
ENSMICG00000017321 Microcebus murinus ENSMICG00000017321 N
ENSMICG00000014767 Microcebus murinus ENSMICG00000014767 N
RPRC008736 Rhodnius prolixus RPRC008736 N
SINV20227 Solenopsis invicta SINV20227 N
SINV24013 Solenopsis invicta SINV24013 N
CERS5 Takifugu rubripes ENSTRUG00000010435 N
cers3.L Xenopus laevis XB-GENE-6251639 N
L798_00373 Zootermopsis nevadensis L798_00373 N