Ppa-unc-42 (Pristionchus pacificus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 PPA12961 T222624_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.814 0.630
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.814 0.630
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.814 0.630
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.814 0.630
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.814 0.630
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.814 0.630
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.814 0.630
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.814 0.630
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.814 0.630
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.720 0.413
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.720 0.413
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.720 0.413
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PPA12961 Homeodomain 80 125

Links

Other Homeodomain family TFs
Other Pristionchus pacificus TFs

1246 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OBART04G30620 Oryza barthii OBART04G30620 N 0.000
ORGLA04G0269500 Oryza glaberrima ORGLA04G0269500 N 0.000
ORGLA11G0041200 Oryza glaberrima ORGLA11G0041200 N 0.000
OGLUM04G30490 Oryza glumaepatula OGLUM04G30490 N 0.000
OGLUM11G04100 Oryza glumaepatula OGLUM11G04100 N 0.000
BGIOSGA034884 Oryza indica BGIOSGA034884 N 0.000
OLONG_022931 Oryza longistaminata OLONG_022931 N 0.000
OMERI04G25800 Oryza meridionalis OMERI04G25800 N 0.000
OMERI11G03850 Oryza meridionalis OMERI11G03850 N 0.000
ONIVA04G29800 Oryza nivara ONIVA04G29800 N 0.000
ONIVA11G04380 Oryza nivara ONIVA11G04380 N 0.000
OPUNC04G28140 Oryza punctata OPUNC04G28140 N 0.000
ORUFI04G32320 Oryza rufipogon ORUFI04G32320 N 0.000
ORUFI11G04240 Oryza rufipogon ORUFI11G04240 N 0.000
OS04G0690100 Oryza sativa OS04G0690100 N 0.000
OS11G0169400 Oryza sativa OS11G0169400 N 0.000