PPA25532 (Pristionchus pacificus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 PPA25532 T222648_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.696 0.273
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.696 0.273
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.696 0.273
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.696 0.273
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.696 0.273
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.696 0.273
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.696 0.273
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.696 0.273
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.696 0.273
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.693 0.364
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.693 0.364
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.693 0.364
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PPA25532 Homeodomain 21 64

Links

Other Homeodomain family TFs
Other Pristionchus pacificus TFs

1250 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSACAG00000029030 Anolis carolinensis ENSACAG00000029030 N
ENSAMXG00000025528 Astyanax mexicanus ENSAMXG00000025528 I
ENSAMXG00000025840 Astyanax mexicanus ENSAMXG00000025840 N
nfil3-2 Danio rerio ENSDARG00000043237 N
nfil3-5 Danio rerio ENSDARG00000094965 N
ENSGMOG00000004386 Gadus morhua ENSGMOG00000004386 N
ENSGMOG00000008894 Gadus morhua ENSGMOG00000008894 I
ENSGACG00000006400 Gasterosteus aculeatus ENSGACG00000006400 I
ENSGACG00000019140 Gasterosteus aculeatus ENSGACG00000019140 N
ENSLACG00000009977 Latimeria chalumnae ENSLACG00000009977 N
ENSLOCG00000018299 Lepisosteus oculatus ENSLOCG00000018299 I
Ogr13014 Ophisaurus gracilis Ogr13014 N
ENSONIG00000018891 Oreochromis niloticus ENSONIG00000018891 I
ENSONIG00000008057 Oreochromis niloticus ENSONIG00000008057 N
nfil3-5 Oryzias latipes ENSORLG00000014730 N
ENSORLG00000016478 Oryzias latipes ENSORLG00000016478 I
ENSPFOG00000020649 Poecilia formosa ENSPFOG00000020649 N
ENSPFOG00000020687 Poecilia formosa ENSPFOG00000020687 N
Pvit_11642 Pogona vitticeps Pvit_11642 N
nfil3-5 Takifugu rubripes ENSTRUG00000009543 N
nfil3-5 Tetraodon nigroviridis ENSTNIG00000002293 N
ENSTNIG00000008333 Tetraodon nigroviridis ENSTNIG00000008333 I
ENSXMAG00000005127 Xiphophorus maculatus ENSXMAG00000005127 N
ENSXMAG00000019530 Xiphophorus maculatus ENSXMAG00000019530 N