CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

YQE_00090 *(Dendroctonus ponderosae)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00046 (Homeobox)	IPR001356	YQE_00090	T224764_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Q70LF3_ARTSF M02211_2.00	Artemia franciscana	BTAATTAB	VTAATTAV	PBM Weirauch et al.(2014) pTH5553	0.830	0.772
cad M03780_2.00	Drosophila melanogaster	NKTTTATKRCHB	VDGYMATAAAMN	SELEX Nitta et al.(2015) cad_1	0.827	0.772
cad M03781_2.00	Drosophila melanogaster	NDTTTATKRCHN	NDGYMATAAAHN	SELEX Nitta et al.(2015) cad_2	0.827	0.772
cad M03782_2.00	Drosophila melanogaster	NDTTTATKRCNB	VNGYMATAAAHN	SELEX Nitta et al.(2015) cad_3	0.827	0.772
cad M03783_2.00	Drosophila melanogaster	NNTTTAYGRYNN	NNRYCRTAAANN	SELEX Nitta et al.(2015) cad_4	0.827	0.772
cad M06223_2.00	Drosophila melanogaster	HTTWATTR	YAATWAAD	B1H Zhu et al.(2011) Cad_Cell_FBgn0000251	0.827	0.772
cad M06224_2.00	Drosophila melanogaster	RBYVDAAMV	BKTTHBRVY	B1H Zhu et al.(2011) cad_FlyReg_FBgn0000251	0.827	0.772
cad M06225_2.00	Drosophila melanogaster	NTTWATKR	YMATWAAN	B1H Zhu et al.(2011) Cad_SOLEXA_FBgn0000251	0.827	0.772
cad M08420_2.00	Drosophila melanogaster	DTTTTATKRYY	RRYMATAAAAH	ChIP-chip Mathelier et al.(2014) MA0216.2	0.827	0.772
cad M09580_2.00	Drosophila melanogaster	DTTTAYGRYN	NRYCRTAAAH	Misc Heinz et al.(2010) Drosophila-Embryos_modEncode	0.827	0.772
cad M09674_2.00	Drosophila melanogaster	HTTTATKRBY	RVYMATAAAD	Misc Kulakovskiy et al.(2009) cad	0.827	0.772
cad M10783_2.00	Drosophila melanogaster	Transfac license required	Transfac license required	Transfac Matys et al.(2006) I$CAD_Q6	0.827	0.772
CDX2 M03196_2.00	Homo sapiens	KTTTATKRB	VYMATAAAM	SELEX Jolma et al.(2013) CDX2_1	0.819	0.789
CDX2 M05248_2.00	Homo sapiens	NDTWAYRRYN	NRYYRTWAHN	SELEX Yin et al.(2017) CDX2_eDBD_HT-SELEX_1	0.819	0.789
CDX2 M05249_2.00	Homo sapiens	NDWWATKRB	VYMATWWHN	SELEX Yin et al.(2017) CDX2_eDBD_HT-SELEX_2	0.819	0.789
CDX2 M08131_2.00	Homo sapiens	YTTTATKRCHB	VDGYMATAAAR	ChIP-seq Mathelier et al.(2014) MA0465.1	0.819	0.789
CDX2 M09152_2.00	Homo sapiens	DTTBATKGCHNB	VNDGCMATVAAH	Misc Kulakovskiy et al.(2013) CDX2_HUMAN.H11MO.0.A	0.819	0.789
CDX2 M10723_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CDX2_Q5_01	0.819	0.789
CDX2 M10724_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CDX2_Q5_02	0.819	0.789
CDX2 M10725_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CDX2_Q5	0.819	0.789
CDX2 M10726_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CDX2_Q6	0.819	0.789
CDX2 M05250_2.00	Homo sapiens	NRTCGTAWHBNN	NNVDWTACGAYN	SELEX Yin et al.(2017) CDX2_eDBD_Methyl-HT-SELEX	0.819	0.789
Cdx2 M00447_2.00	Mus musculus	NWWAYDRNN	NNYHRTWWN	PBM Berger et al.(2008) Cdx2_4272	0.819	0.772
Cdx2 M09193_2.00	Mus musculus	BTTTATKRCYBY	RVRGYMATAAAV	Misc Kulakovskiy et al.(2013) CDX2_MOUSE.H11MO.0.A	0.819	0.772
Cdx2 M09572_2.00	Mus musculus	NTTTTATKRC	GYMATAAAAN	Misc Heinz et al.(2010) mES-Cdx2_GSE14586	0.819	0.772
CDX1 M10761_2.00	Gallus gallus	BDBWAAK	MTTWVHV	Transfac Matys et al.(2006) V$CDXA_01	0.819	0.772
CDX1 M10762_2.00	Gallus gallus	WWWWMYR	YRKWAWW	Transfac Matys et al.(2006) V$CDXA_02	0.819	0.772
Cdx1 M00427_2.00	Mus musculus	NWWATDRNN	NNYHATWWN	PBM Berger et al.(2008) Cdx1_2245	0.819	0.754
CDX1 M03115_2.00	Homo sapiens	NTTTATKRB	VYMATAAAN	SELEX Jolma et al.(2013) CDX1_1	0.819	0.754
CDX1 M05018_2.00	Homo sapiens	VKTTTATKRCN	NGYMATAAAMB	SELEX Yin et al.(2017) CDX1_eDBD_HT-SELEX	0.819	0.754
CDX1 M09140_2.00	Homo sapiens	HCWTAAAD	HTTTAWGD	Misc Kulakovskiy et al.(2013) CDX1_HUMAN.H11MO.0.C	0.819	0.754
Cdx1 M09186_2.00	Mus musculus	HCWTAAAD	HTTTAWGD	Misc Kulakovskiy et al.(2013) CDX1_MOUSE.H11MO.0.C	0.819	0.754
CDX1 M10670_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CDX1_Q4	0.819	0.754
CDX1 M10671_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CDX1_Q5	0.819	0.754
CDX1 M05019_2.00	Homo sapiens	NGTCGTAAAWB	VWTTTACGACN	SELEX Yin et al.(2017) CDX1_eDBD_Methyl-HT-SELEX	0.819	0.754
CDX4 M05129_2.00	Homo sapiens	VKTTTATKRCH	DGYMATAAAMB	SELEX Yin et al.(2017) CDX4_FL_HT-SELEX	0.787	0.754
Cdx4 M09197_2.00	Mus musculus	WGATTTATDRBH	DVYHATAAATCW	Misc Kulakovskiy et al.(2013) CDX4_MOUSE.H11MO.0.A	0.787	0.754
CDX4 M05130_2.00	Homo sapiens	BGTCGTAAAHN	NDTTTACGACV	SELEX Yin et al.(2017) CDX4_FL_Methyl-HT-SELEX_1	0.787	0.754
CDX4 M05131_2.00	Homo sapiens	VKTTTATKGCN	NGCMATAAAMB	SELEX Yin et al.(2017) CDX4_FL_Methyl-HT-SELEX_2	0.787	0.754
pal-1 M02183_2.00	Caenorhabditis elegans	GYAATWAA	TTWATTRC	PBM Weirauch et al.(2014) pTH6016	0.652	0.596
Q9GP48_9TURB M02217_2.00	Discocelis tigrina	DTAATTAB	VTAATTAH	PBM Weirauch et al.(2014) pTH6515	0.617	0.649
Q24782_9CNID M02206_2.00	Eleutheria dichotoma	TTAATTAA	TTAATTAA	PBM Weirauch et al.(2014) pTH5486	0.605	0.491
hoxd13a M02081_2.00	Danio rerio	WTTTATDR	YHATAAAW	PBM Weirauch et al.(2014) pTH6143	0.602	0.544
HOXD13 M00299_2.00	Homo sapiens	NTTWAYDDN	NHHRTWAAN	PBM Barrera et al.(2016) HOXD13_REF	0.601	0.526
Hoxd13 M00394_2.00	Mus musculus	NWTHRYDDN	NHHRYDAWN	PBM Berger et al.(2008) Hoxd13_2356	0.601	0.526
HOXD13 M03141_2.00	Homo sapiens	DTTTTATKRS	SYMATAAAAH	SELEX Jolma et al.(2013) HOXD13_1	0.601	0.526
HOXD13 M03142_2.00	Homo sapiens	BCTCGTAAAAH	DTTTTACGAGV	SELEX Jolma et al.(2013) HOXD13_2	0.601	0.526
Hoxd13 M03247_2.00	Mus musculus	DKTTTATTRS	SYAATAAAMH	SELEX Jolma et al.(2013) Hoxd13_1	0.601	0.526
Hoxd13 M03248_2.00	Mus musculus	DDTTTAYKAGN	NCTMRTAAAHH	SELEX Jolma et al.(2013) Hoxd13_2	0.601	0.526
HOXD13 M05122_2.00	Homo sapiens	GKTTTATKGSS	SSCMATAAAMC	SELEX Yin et al.(2017) HOXD13_eDBD_HT-SELEX_1	0.601	0.526
HOXD13 M05123_2.00	Homo sapiens	BCTCGTAAAMH	DKTTTACGAGV	SELEX Yin et al.(2017) HOXD13_eDBD_HT-SELEX_2	0.601	0.526
HOXD13 M10689_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HOXD13_Q6	0.601	0.526
HOXD13 M00298_2.00	Homo sapiens	NTTWAYDDN	NHHRTWAAN	PBM Barrera et al.(2016) HOXD13_R306W	0.601	0.526
HOXD13 M05124_2.00	Homo sapiens	DDTTTATTRBB	VVYAATAAAHH	SELEX Yin et al.(2017) HOXD13_eDBD_Methyl-HT-SELEX_1	0.601	0.526
HOXD13 M05125_2.00	Homo sapiens	VCTCGTAAAAH	DTTTTACGAGB	SELEX Yin et al.(2017) HOXD13_eDBD_Methyl-HT-SELEX_2	0.601	0.526
HOXD13 M00295_2.00	Homo sapiens	NTTWAYDDN	NHHRTWAAN	PBM Barrera et al.(2016) HOXD13_N298S	0.601	0.509
HOXD13 M00300_2.00	Homo sapiens	WTTTATDR	YHATAAAW	PBM Barrera et al.(2016) HOXD13_S316C	0.601	0.509
HOXD13 M00293_2.00	Homo sapiens	NTTWAYDDNN	NNHHRTWAAN	PBM Barrera et al.(2016) HOXD13_I297V	0.601	0.509
For this family, TFs with SR scores > 0.599* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENN83554	Homeodomain	19	82	RKTRTKDKYRVVYTDHQRLQLEKEYSLNTRYINIKRKAEIALDLNLSERQVKIWFQNRRAKDRK

Links
Other Homeodomain family TFs
Other *Dendroctonus ponderosae* TFs

348 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ENSAMEG00000011241	Ailuropoda melanoleuca	ENSAMEG00000011241	N	0.000
ZSCAN21	Bos taurus	ENSBTAG00000030956	N	0.000
ENSCJAG00000015664	Callithrix jacchus	ENSCJAG00000015664	I	0.000
ZSCAN21	Cavia porcellus	ENSCPOG00000015351	N	0.000
ENSCSAG00000017830	Chlorocebus sabaeus	ENSCSAG00000017830	N	0.000
Zscan21	Dipodomys ordii	ENSDORG00000009833	N	0.000
ZSCAN21	Equus caballus	ENSECAG00000024642	N	0.000
ZSCAN21	Felis catus	ENSFCAG00000029089	N	0.000
ZSCAN21	Gorilla gorilla	ENSGGOG00000011448	N	0.000
ZSCAN21	Homo sapiens	ENSG00000166529	N	0.000
ENSSTOG00000021741	Ictidomys tridecemlineatus	ENSSTOG00000021741	N	0.000
ENSMMUP00000018505	Macaca fascicularis	ENSMMUP00000018505	N	0.000
ZSCAN21	Macaca mulatta	ENSMMUG00000014082	N	0.000
ZSCAN21	Microcebus murinus	ENSMICG00000003959	N	0.000
ENSMPUG00000010896	Mustela putorius furo	ENSMPUG00000010896	N	0.000
Zscan21	Mus musculus	ENSMUSG00000037017	N	0.000
Myotis_brandtii_Zscan21_10002830	Myotis brandtii	Myotis_brandtii_Zscan21_10002830	N	0.000
ENSNLEG00000011354	Nomascus leucogenys	ENSNLEG00000011354	N	0.000
ENSOCUG00000015340	Oryctolagus cuniculus	ENSOCUG00000015340	N	0.000
ZSCAN21	Otolemur garnettii	ENSOGAG00000016311	N	0.000
ENSOARG00000017953	Ovis aries	ENSOARG00000017953	N	0.000
ZSCAN21	Pan troglodytes	ENSPTRG00000019469	N	0.000
ENSPANG00000008154	Papio anubis	ENSPANG00000008154	N	0.000
ENSPPYG00000017395	Pongo abelii	ENSPPYG00000017395	N	0.000
ZSCAN21	Procavia capensis	ENSPCAG00000005227	N	0.000
ZSCAN21	Pteropus vampyrus	ENSPVAG00000005181	N	0.000
Zscan21	Rattus norvegicus	ENSRNOG00000039234	N	0.000
ENSSSCG00000009866	Sus scrofa	ENSSSCG00000009866	N	0.000
ENSSSCG00000021941	Sus scrofa	ENSSSCG00000021941	N	0.000
ENSTSYG00000006410	Tarsius syrichta	ENSTSYG00000006410	N	0.000
ZSCAN21	Tupaia belangeri	ENSTBEG00000012971	N	0.000
ENSTBEG00000016819	Tupaia belangeri	ENSTBEG00000016819	N	0.000
ZSCAN21	Tursiops truncatus	ENSTTRG00000012309	N	0.000
ZSCAN21	Vicugna pacos	ENSVPAG00000004514	N	0.000

YQE_00090 (Dendroctonus ponderosae) Homeodomain

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

348 Related TFs

YQE_00090 **(Dendroctonus ponderosae)
Homeodomain**