Alligator_sinensis_CCG007467.1 (Alligator sinensis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Alligator_sinensis_CCG007467.1 T225198_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Barhl2
M00460_2.00 		Mus musculus
NTAAWNRNN
NNYNWTTAN		 PBM
Berger et al.(2008)
Barhl2_3868 		0.696 1.000
BARHL2
M03157_2.00 		Homo sapiens
NNTAAWYGNN
NNCRWTTANN		 SELEX
Jolma et al.(2013)
BARHL2_1 		0.696 1.000
BARHL2
M03158_2.00 		Homo sapiens
NNTAAWBGNN
NNCVWTTANN		 SELEX
Jolma et al.(2013)
BARHL2_2 		0.696 1.000
BARHL2
M03159_2.00 		Homo sapiens
TAAWYGNNNNTAAWYR
YRWTTANNNNCRWTTA		 SELEX
Jolma et al.(2013)
BARHL2_3 		0.696 1.000
BARHL2
M03160_2.00 		Homo sapiens
NNTAAWYGNH
DNCRWTTANN		 SELEX
Jolma et al.(2013)
BARHL2_4 		0.696 1.000
BARHL2
M03161_2.00 		Homo sapiens
NNTAAWYGNN
NNCRWTTANN		 SELEX
Jolma et al.(2013)
BARHL2_5 		0.696 1.000
BARHL2
M03162_2.00 		Homo sapiens
TAAWYGNYNHTAAWYG
CRWTTADNRNCRWTTA		 SELEX
Jolma et al.(2013)
BARHL2_6 		0.696 1.000
BARHL2
M05164_2.00 		Homo sapiens
HTAAAYGNY
RNCRTTTAD		 SELEX
Yin et al.(2017)
BARHL2_eDBD_HT-SELEX_1 		0.696 1.000
BARHL2
M05165_2.00 		Homo sapiens
NTAAWTGNB
VNCAWTTAN		 SELEX
Yin et al.(2017)
BARHL2_eDBD_HT-SELEX_2 		0.696 1.000
BARHL2
M05167_2.00 		Homo sapiens
NTAAWYGN
NCRWTTAN		 SELEX
Yin et al.(2017)
BARHL2_FL_HT-SELEX_1 		0.696 1.000
BARHL2
M05168_2.00 		Homo sapiens
NTAAWYGN
NCRWTTAN		 SELEX
Yin et al.(2017)
BARHL2_FL_HT-SELEX_2 		0.696 1.000
BARHL2
M05166_2.00 		Homo sapiens
NTAAWTGNB
VNCAWTTAN		 SELEX
Yin et al.(2017)
BARHL2_eDBD_Methyl-HT-SELEX 		0.696 1.000
BARHL2
M05169_2.00 		Homo sapiens
NTAAWTGN
NCAWTTAN		 SELEX
Yin et al.(2017)
BARHL2_FL_Methyl-HT-SELEX 		0.696 1.000
ENSTNIG00000006040
M02106_2.00 		Tetraodon nigroviridis
NNNBTAAWHRBNN
NNVYDWTTAVNNN		 PBM
Weirauch et al.(2014)
pTH6503 		0.688 0.808
Barhl1
M00433_2.00 		Mus musculus
NTAAWNRNN
NNYNWTTAN		 PBM
Berger et al.(2008)
Barhl1_2590 		0.682 0.923
Barhl1
M03258_2.00 		Mus musculus
NNTAAWYGNH
DNCRWTTANN		 SELEX
Jolma et al.(2013)
Barhl1_1 		0.682 0.923
Barhl1
M03259_2.00 		Mus musculus
NNTAADNRNN
NNYNHTTANN		 SELEX
Jolma et al.(2013)
Barhl1_2 		0.682 0.923
Barhl1
M03260_2.00 		Mus musculus
TAAWYGNYNNTAAWYG
CRWTTANNRNCRWTTA		 SELEX
Jolma et al.(2013)
Barhl1_3 		0.682 0.923
BARHL1
M05091_2.00 		Homo sapiens
NTAAWYGN
NCRWTTAN		 SELEX
Yin et al.(2017)
BARHL1_eDBD_HT-SELEX_1 		0.682 0.923
BARHL1
M05092_2.00 		Homo sapiens
NTAADBGN
NCVHTTAN		 SELEX
Yin et al.(2017)
BARHL1_eDBD_HT-SELEX_2 		0.682 0.923
BARHL1
M05093_2.00 		Homo sapiens
NTAADKGN
NCMHTTAN		 SELEX
Yin et al.(2017)
BARHL1_eDBD_Methyl-HT-SELEX 		0.682 0.923
B-H2
M03810_2.00 		Drosophila melanogaster
VNTAAAYGNH
DNCRTTTANB		 SELEX
Nitta et al.(2015)
B-H2_1 		0.681 0.808
B-H2
M03811_2.00 		Drosophila melanogaster
SNTAADBGN
NCVHTTANS		 SELEX
Nitta et al.(2015)
B-H2_2 		0.681 0.808
B-H2
M06503_2.00 		Drosophila melanogaster
WTAATTG
CAATTAW		 B1H
Mathelier et al.(2014)
MA0169.1 		0.681 0.808
B-H1
M03829_2.00 		Drosophila melanogaster
VNTAAWYGNN
NNCRWTTANB		 SELEX
Nitta et al.(2015)
B-H1_1 		0.681 0.769
B-H1
M03830_2.00 		Drosophila melanogaster
SNTAADBGN
NCVHTTANS		 SELEX
Nitta et al.(2015)
B-H1_2 		0.681 0.769
B-H1
M06512_2.00 		Drosophila melanogaster
HTAAWYG
CRWTTAD		 B1H
Mathelier et al.(2014)
MA0168.1 		0.681 0.769
Bsx
M00516_2.00 		Mus musculus
NTAAYBDNN
NNHVRTTAN		 PBM
Berger et al.(2008)
Bsx_3483 		0.625 0.654
bsh
M02113_2.00 		Drosophila melanogaster
NNTAAYBDNN
NNHVRTTANN		 PBM
Weirauch et al.(2014)
pTH6569 		0.625 0.654
BSX
M03235_2.00 		Homo sapiens
NTAATBRN
NYVATTAN		 SELEX
Jolma et al.(2013)
BSX_1 		0.625 0.654
bsh
M03786_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
bsh_1 		0.625 0.654
bsh
M03787_2.00 		Drosophila melanogaster
TAATTRVWTAATKR
YMATTAWBYAATTA		 SELEX
Nitta et al.(2015)
bsh_2 		0.625 0.654
bsh
M03788_2.00 		Drosophila melanogaster
NTAATBRN
NYVATTAN		 SELEX
Nitta et al.(2015)
bsh_3 		0.625 0.654
BSX
M05377_2.00 		Homo sapiens
NTAAYGHB
VDCRTTAN		 SELEX
Yin et al.(2017)
BSX_eDBD_HT-SELEX_1 		0.625 0.654
BSX
M05378_2.00 		Homo sapiens
BTAATBRV
BYVATTAV		 SELEX
Yin et al.(2017)
BSX_eDBD_HT-SELEX_2 		0.625 0.654
bsh
M06483_2.00 		Drosophila melanogaster
YTAATBR
YVATTAR		 B1H
Mathelier et al.(2014)
MA0214.1 		0.625 0.654
bsh
M06231_2.00 		Drosophila melanogaster
HYTAATBRV
BYVATTARD		 B1H
Zhu et al.(2011)
Bsh_Cell_FBgn0000529 		0.625 0.654
bsh
M06232_2.00 		Drosophila melanogaster
NTAATKR
YMATTAN		 B1H
Zhu et al.(2011)
Bsh_SOLEXA_FBgn0000529 		0.625 0.654
BSX
M05379_2.00 		Homo sapiens
NTAAYGHB
VDCRTTAN		 SELEX
Yin et al.(2017)
BSX_eDBD_Methyl-HT-SELEX_1 		0.625 0.654
BSX
M05380_2.00 		Homo sapiens
NTAATKRN
NYMATTAN		 SELEX
Yin et al.(2017)
BSX_eDBD_Methyl-HT-SELEX_2 		0.625 0.654
CG11085
M03857_2.00 		Drosophila melanogaster
BTAAWYGN
NCRWTTAV		 SELEX
Nitta et al.(2015)
CG11085_1 		0.608 0.673
CG11085
M03858_2.00 		Drosophila melanogaster
NTAAWCGN
NCGWTTAN		 SELEX
Nitta et al.(2015)
CG11085_2 		0.608 0.673
CG11085
M06532_2.00 		Drosophila melanogaster
TTAATDG
CHATTAA		 B1H
Mathelier et al.(2014)
MA0171.1 		0.608 0.673
CG11085
M06339_2.00 		Drosophila melanogaster
NTTAATDGV
BCHATTAAN		 B1H
Zhu et al.(2011)
CG11085_Cell_FBgn0030408 		0.608 0.673
CG11085
M06340_2.00 		Drosophila melanogaster
NHTAAWBRNN
NNYVWTTADN		 B1H
Zhu et al.(2011)
CG11085_SOLEXA_FBgn0030408 		0.608 0.673
btn
M03832_2.00 		Drosophila melanogaster
NNTAATKANB
VNTMATTANN		 SELEX
Nitta et al.(2015)
btn_1 		0.603 0.558
btn
M03833_2.00 		Drosophila melanogaster
VNTAATKABN
NVTMATTANB		 SELEX
Nitta et al.(2015)
btn_2 		0.603 0.558
btn
M06515_2.00 		Drosophila melanogaster
DTAATKA
TMATTAH		 B1H
Mathelier et al.(2014)
MA0215.1 		0.603 0.558
btn
M06307_2.00 		Drosophila melanogaster
NDTAATKA
TMATTAHN		 B1H
Zhu et al.(2011)
Btn_Cell_FBgn0014949 		0.603 0.558
btn
M06308_2.00 		Drosophila melanogaster
HTAATKA
TMATTAD		 B1H
Zhu et al.(2011)
Btn_SOLEXA_FBgn0014949 		0.603 0.558
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG007467.1 Homeodomain 213 264

Links

Other Homeodomain family TFs
Other Alligator sinensis TFs

655 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BBA_00803 Beauveria bassiana BBA_00803 I 0.000
Bcin03g03310 Botrytis cinerea Bcin03g03310 N 0.000
CHGG_02523 Chaetomium globosum CHGG_02523 I 0.000
CTHT_0065380 Chaetomium thermophilum CTHT_0065380 I 0.000
CPUR_01075 Claviceps purpurea CPUR_01075 I 0.000
CFIO01_12739 Colletotrichum fioriniae CFIO01_12739 I 0.000
CGGC5_3697 Colletotrichum gloeosporioides CGGC5_3697 I 0.000
GLRG_03163 Colletotrichum graminicola GLRG_03163 I 0.000
CH063_14002 Colletotrichum higginsianum CH063_14002 I 0.000
Cob_11908 Colletotrichum orbiculare Cob_11908 I 0.000
CSUB01_04359 Colletotrichum sublineola CSUB01_04359 I 0.000
CCM_05599 Cordyceps militaris CCM_05599 N 0.000
UCREL1_6424 Eutypa lata UCREL1_6424 I 0.000
FFUJ_02685 Fusarium fujikuroi FFUJ_02685 I 0.000
FGRRES_07157 Fusarium graminearum FGRRES_07157 I 0.000
FOXG_01644 Fusarium oxysporum FOXG_01644 I 0.000
FPSE_04121 Fusarium pseudograminearum FPSE_04121 I 0.000
NechaG84694 Fusarium solani NechaG84694 I 0.000
FVEG_08005 Fusarium verticillioides FVEG_08005 I 0.000
GGTG_00579 Gaeumannomyces graminis GGTG_00579 I 0.000
CMQ_4188 Grosmannia clavigera CMQ_4188 I 0.000
MGG_00729 Magnaporthe oryzae MGG_00729 N 0.000
MAPG_07299 Magnaporthe poae MAPG_07299 I 0.000
MAC_00519 Metarhizium acridum MAC_00519 I 0.000
MANI_109776 Metarhizium anisopliae MANI_109776 I 0.000
MBR_03784 Metarhizium brunneum MBR_03784 I 0.000
MGU_05842 Metarhizium guizhouense MGU_05842 I 0.000
MAJ_02033 Metarhizium majus MAJ_02033 I 0.000
X797_006151 Metarhizium robertsii X797_006151 I 0.000
MYCTH_46530 Myceliophthora thermophila MYCTH_46530 I 0.000
fgenesh1_pg.sca_6_chr9_2_0000157 Nectria haematococca fgenesh1_pg.sca_6_chr9_2_0000157 I 0.000
vib-1 Neurospora crassa NCU03725 D 0.000
estExt_fgenesh2_pg.C_10270 Neurospora discreta estExt_fgenesh2_pg.C_10270 I 0.000
NEUTE1DRAFT_127885 Neurospora tetrasperma NEUTE1DRAFT_127885 I 0.000
F503_08848 Ophiostoma piceae uamh F503_08848 I 0.000
PFICI_09469 Pestalotiopsis fici PFICI_09469 I 0.000
PODANS_2_9470 Podospora anserina PODANS_2_9470 I 0.000
SAPIO_CDS10442 Scedosporium apiospermum SAPIO_CDS10442 I 0.000
SS1G_00692 Sclerotinia sclerotiorum SS1G_00692 N 0.000
SMAC_02578 Sordaria macrospora SMAC_02578 I 0.000
SPBR_07260 Sporothrix brasiliensis SPBR_07260 I 0.000
HMPREF1624_06747 Sporothrix schenckii HMPREF1624_06747 I 0.000
S40288_01439 Stachybotrys chartarum S40288_01439 N 0.000
S40285_04243 Stachybotrys chlorohalonata S40285_04243 I 0.000
VHEMI01254 Torrubiella hemipterigena VHEMI01254 I 0.000
TRIATDRAFT_145258 Trichoderma atroviride TRIATDRAFT_145258 I 0.000
TRIREDRAFT_54675 Trichoderma reesei TRIREDRAFT_54675 I 0.000
TRIVIDRAFT_114530 Trichoderma virens TRIVIDRAFT_114530 I 0.000
UV8b_2461 Ustilaginoidea virens UV8b_2461 I 0.000
VDBG_04231 Verticillium albo atrum VDBG_04231 I 0.000
VDBG_04231 Verticillium alfalfae VDBG_04231 I 0.000