Cflo_03636--XP_001120088.1_APIME (Camponotus floridanus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Cflo_03636--XP_001120088.1_APIME T225509_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.777 0.543
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.777 0.543
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.777 0.543
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.777 0.543
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.777 0.543
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.777 0.543
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.777 0.543
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.777 0.543
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.777 0.543
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.744 0.370
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.744 0.370
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.744 0.370
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cflo_03636--XP_001120088.1_APIME Homeodomain 77 122

Links

Other Homeodomain family TFs
Other Camponotus floridanus TFs

1239 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
FRS8 Arabidopsis thaliana AT1G80010 N 0.000
Bostr.20129s0514 Boechera stricta Bostr.20129s0514 N 0.000
Bo6g080100 Brassica oleracea Bo6g080100 N 0.000
Bra003544 Brassica rapa Bra003544 N 0.000
PK08039.1 Cannabis sativa PK08039.1 N 0.000
Cagra.1725s0138 Capsella grandiflora Cagra.1725s0138 N 0.000
Carubv10019873m.g Capsella rubella Carubv10019873m.g N 0.000
Cucsa.096050 Cucumis sativus Cucsa.096050 N 0.000
Thhalv10018210m.g Eutrema salsugineum Thhalv10018210m.g N 0.000
gene16000-v1.0-hybrid Fragaria vesca gene16000-v1.0-hybrid N 0.000
GLYMA15G13160 Glycine max GLYMA15G13160 N 0.000
Gorai.006G101600 Gossypium raimondii Gorai.006G101600 N 0.000
chr6.CM0066.190.nc Lotus japonicus chr6.CM0066.190.nc N 0.000
MDP0000126939 Malus domestica MDP0000126939 N 0.000
cassava23820.valid.m1 Manihot esculenta cassava23820.valid.m1 N 0.000
FRS8 Populus trichocarpa POPTR_0003s02550 N 0.000
PRUPE_ppa001906mg Prunus persica PRUPE_ppa001906mg N 0.000
SapurV1A.0199s0220 Salix purpurea SapurV1A.0199s0220 N 0.000
Solyc06g068210.1 Solanum lycopersicum Solyc06g068210.1 N 0.000
TCM_027272 Theobroma cacao TCM_027272 N 0.000