Cmyd_10010796 (Chelonia mydas)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Cmyd_10010796 T225726_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.675 0.426
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.675 0.426
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.675 0.426
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.675 0.426
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.675 0.426
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.675 0.426
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.675 0.426
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.675 0.426
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.675 0.426
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.638 0.511
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.638 0.511
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.638 0.511
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10010796 Homeodomain 182 228

Links

Other Homeodomain family TFs
Other Chelonia mydas TFs

1099 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANCCAN_22461 Ancylostoma caninum ANCCAN_22461 N 0.000
ASIM_0001150501 Anisakis simplex ASIM_0001150501 N 0.000
ADAC008104 Anopheles darlingi ADAC008104 I 0.000
ADAC004891 Anopheles darlingi ADAC004891 N 0.000
ENSP00000360811-D1 Bos grunniens ENSP00000360811-D1 I 0.000
MIXL1 Callithrix jacchus ENSCJAG00000012740 I 0.000
Aan_R011917 Calypte anna Aan_R011917 I 0.000
Cflo_02794--XP_001120105.1_APIME Camponotus floridanus Cflo_02794--XP_001120105.1_APIME I 0.000
Cflo_04174--XP_001120833.1_APIME Camponotus floridanus Cflo_04174--XP_001120833.1_APIME I 0.000
PRRX2 Cavia porcellus ENSCPOG00000021821 I 0.000
YQE_10100 Dendroctonus ponderosae YQE_10100 I 0.000
DICVIV_02647 Dictyocaulus viviparus DICVIV_02647 I 0.000
GF12207 Drosophila ananassae FBgn0089246 I 0.000
GK22877 Drosophila willistoni FBgn0224839 I 0.000
EVEC_0000536401 Enterobius vermicularis EVEC_0000536401 N 0.000
HMEL006244 Heliconius melpomene HMEL006244 I 0.000
MCOS_0000004601 Mesocestoides corti MCOS_0000004601 I 0.000
SNAPOd2T00016706001 Oikopleura dioica SNAPOd2T00016706001 I 0.000
Ogr09065 Ophisaurus gracilis Ogr09065 I 0.000
PPAI007004 Phlebotomus papatasi PPAI007004 I 0.000
nRc.2.0.1.g34428 Romanomermis culicivorax nRc.2.0.1.g34428 I 0.000
L892_g24303 Steinernema scapterisci L892_g24303 I 0.000
SPU_004366 Strongylocentrotus purpuratus SPU_004366 I 0.000
drgx Takifugu rubripes ENSTRUG00000013446 I 0.000
EFV53972 Trichinella spiralis EFV53972 N 0.000
EFV55592 Trichinella spiralis EFV55592 I 0.000
TTRE_0000072001 Trichuris trichiura TTRE_0000072001 I 0.000