Ogr12625 (Ophisaurus gracilis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Ogr12625 T226567_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.727 0.426
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.727 0.426
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.727 0.426
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.727 0.426
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.727 0.426
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.727 0.426
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.727 0.426
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.727 0.426
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.727 0.426
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.638 0.298
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.638 0.298
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.638 0.298
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ogr12625 Homeodomain 78 124

Links

Other Homeodomain family TFs
Other Ophisaurus gracilis TFs

1121 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ASIM_0001581901 Anisakis simplex ASIM_0001581901 N 0.000
AARA005398 Anopheles arabiensis AARA005398 N 0.000
AATE013347 Anopheles atroparvus AATE013347 N 0.000
ACUA015214 Anopheles culicifacies ACUA015214 N 0.000
ADIR004989 Anopheles dirus ADIR004989 N 0.000
AFAF002833 Anopheles farauti AFAF002833 N 0.000
AFUN008632 Anopheles funestus AFUN008632 N 0.000
AMAM016984 Anopheles maculatus AMAM016984 N 0.000
ASIS022569 Anopheles sinensis ASIS022569 N 0.000
ASIS022602 Anopheles sinensis ASIS022602 N 0.000
ASTEI07322 Anopheles stephensi ASTEI07322 N 0.000
ACEP24768 Atta cephalotes ACEP24768 N 0.000
BGIBMGA006133 Bombyx mori BGIBMGA006133 N 0.000
gw.266.126.1 Branchiostoma floridae gw.266.126.1 N 0.000
CLEC007059 Cimex lectularius CLEC007059 N 0.000
CLEC007062 Cimex lectularius CLEC007062 N 0.000
CpipJ_CPIJ002496 Culex pipiens CpipJ_CPIJ002496 N 0.000
CpipJ_CPIJ012536 Culex pipiens CpipJ_CPIJ012536 N 0.000
CPIJ012536 Culex quinquefasciatus CPIJ012536 N 0.000
CPIJ002496 Culex quinquefasciatus CPIJ002496 N 0.000
DME_0000858201 Dracunculus medinensis DME_0000858201 N 0.000
GPUH_0002286201 Gongylonema pulchrum GPUH_0002286201 N 0.000
ISCW020918 Ixodes scapularis ISCW020918 N 0.000
LDEC020738 Leptinotarsa decemlineata LDEC020738 N 0.000
LCUP009738 Lucilia cuprina LCUP009738 N 0.000
MESCA008698 Megaselia scalaris MESCA008698 N 0.000
MCINX006866 Melitaea cinxia MCINX006866 N 0.000
Myotis_brandtii_Gfi1_10004111 Myotis brandtii Myotis_brandtii_Gfi1_10004111 N 0.000
Ocbimv22006972m.g Octopus bimaculoides Ocbimv22006972m.g N 0.000
PPAI008930 Phlebotomus papatasi PPAI008930 N 0.000
scaffold152-EXSNAP2012.15 Pristionchus exspectatus scaffold152-EXSNAP2012.15 N 0.000
RPRC005969 Rhodnius prolixus RPRC005969 N 0.000
RPRC005967 Rhodnius prolixus RPRC005967 N 0.000
SBAD_0001083101 Soboliphyme baturini SBAD_0001083101 N 0.000
SINV24825 Solenopsis invicta SINV24825 N 0.000
SINV20314 Solenopsis invicta SINV20314 N 0.000
SPER_0000300601 Spirometra erinaceieuropaei SPER_0000300601 N 0.000
L889_g12163 Steinernema feltiae L889_g12163 N 0.000
L893_g23375 Steinernema glaseri L893_g23375 N 0.000
SMAR014824 Strigamia maritima SMAR014824 N 0.000
SMAR014254 Strigamia maritima SMAR014254 N 0.000