Pm002609 (Prunus mume)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Pm002609 T226630_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.826 0.702
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.638 0.574
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.606 0.426
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.606 0.426
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.606 0.426
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.606 0.426
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pm002609 Homeodomain 431 480

Links

Other Homeodomain family TFs
Other Prunus mume TFs

1006 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000019915 Ailuropoda melanoleuca ENSAMEG00000019915 N 0.000
Alligator_sinensis_CCG014093.1 Alligator sinensis Alligator_sinensis_CCG014093.1 N 0.000
ENSAPLG00000001043 Anas platyrhynchos ENSAPLG00000001043 N 0.000
ASCL3 Anolis carolinensis ENSACAG00000009879 N 0.000
Afo_R014584 Aptenodytes forsteri Afo_R014584 N 0.000
ENSP00000318846-D1 Bos grunniens ENSP00000318846-D1 N 0.000
ASCL3 Bos taurus ENSBTAG00000032339 N 0.000
Brh_R010606 Buceros rhinoceros Brh_R010606 N 0.000
ASCL3 Callithrix jacchus ENSCJAG00000011693 N 0.000
Aan_R006569 Calypte anna Aan_R006569 N 0.000
ASCL3 Canis familiaris ENSCAFG00000024403 N 0.000
ASCL3 Cavia porcellus ENSCPOG00000011108 N 0.000
Cmyd_10014495 Chelonia mydas Cmyd_10014495 N 0.000
ENSCSAG00000019329 Chlorocebus sabaeus ENSCSAG00000019329 N 0.000
ENSCSAVG00000009227 Ciona savignyi ENSCSAVG00000009227 N 0.000
ASCL3 Dasypus novemcinctus ENSDNOG00000025092 N 0.000
ENSDORG00000013306 Dipodomys ordii ENSDORG00000013306 N 0.000
ASCL3 Equus caballus ENSECAG00000008707 N 0.000
ASCL3 Felis catus ENSFCAG00000008414 N 0.000
ENSFALG00000014620 Ficedula albicollis ENSFALG00000014620 N 0.000
Gfo_R011835 Geospiza fortis Gfo_R011835 N 0.000
ASCL3 Homo sapiens ENSG00000176009 N 0.000
ENSSTOG00000002499 Ictidomys tridecemlineatus ENSSTOG00000002499 N 0.000
ENSLACG00000017099 Latimeria chalumnae ENSLACG00000017099 N 0.000
ASCL3 Loxodonta africana ENSLAFG00000010672 N 0.000
ENSP00000318846 Macaca fascicularis ENSP00000318846 N 0.000
ASCL3 Macaca mulatta ENSMMUG00000001997 N 0.000
ENSMEUG00000016296 Macropus eugenii ENSMEUG00000016296 N 0.000
ASCL3 Meleagris gallopavo ENSMGAG00000006388 N 0.000
ENSMICG00000005296 Microcebus murinus ENSMICG00000005296 N 0.000
ASCL3 Monodelphis domestica ENSMODG00000024589 N 0.000
Ascl3 Mus musculus ENSMUSG00000035951 N 0.000
Myotis_brandtii_ASCL3_10026847 Myotis brandtii Myotis_brandtii_ASCL3_10026847 N 0.000
ASCL3 Myotis lucifugus ENSMLUG00000014718 N 0.000
ENSNLEG00000017548 Nomascus leucogenys ENSNLEG00000017548 N 0.000
ASCL3 Ochotona princeps ENSOPRG00000004802 N 0.000
Ogr18889 Ophisaurus gracilis Ogr18889 N 0.000
ASCL3 Ornithorhynchus anatinus ENSOANG00000003112 N 0.000
ASCL3 Oryctolagus cuniculus ENSOCUG00000011310 N 0.000
ASCL3 Otolemur garnettii ENSOGAG00000014012 N 0.000
ENSOARG00000017152 Ovis aries ENSOARG00000017152 N 0.000
ASCL3 Pan troglodytes ENSPTRG00000003339 N 0.000
ENSPANG00000002749 Papio anubis ENSPANG00000002749 N 0.000
ENSPMAG00000008115 Petromyzon marinus ENSPMAG00000008115 N 0.000
Pvit_03791 Pogona vitticeps Pvit_03791 N 0.000
ENSPPYG00000003501 Pongo abelii ENSPPYG00000003501 N 0.000
ASCL3 Procavia capensis ENSPCAG00000014597 N 0.000
ASCL3 Pteropus vampyrus ENSPVAG00000000414 N 0.000
ASCL3 Sorex araneus ENSSARG00000005318 N 0.000
ASCL3 Sus scrofa ENSSSCG00000014572 N 0.000
ASCL3 Taeniopygia guttata ENSTGUG00000008324 N 0.000
ENSTSYG00000006425 Tarsius syrichta ENSTSYG00000006425 N 0.000
ASCL3 Tupaia belangeri ENSTBEG00000004929 N 0.000
Tal_R007401 Tyto alba Tal_R007401 N 0.000