29822.m003500 (Ricinus communis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 29822.m003500 T226982_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.862 0.946
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.862 0.946
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.846 0.946
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.846 0.946
ATHB-13
M06900_2.00 		Arabidopsis thaliana
HYAATAATTDD
HHAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB13_col_a 		0.724 0.911
ATHB-13
M06901_2.00 		Arabidopsis thaliana
NYAATAATTRW
WYAATTATTRN		 Dap-seq
OMalley et al.(2016)
ATHB13_colamp_a 		0.724 0.911
ATHB-51
M00867_2.00 		Arabidopsis thaliana
ATWATKNN
NNMATWAT		 PBM
Franco-Zorrilla et al.(2014)
ATHB51 		0.711 0.607
ATHB-51
M06927_2.00 		Arabidopsis thaliana
DNCAATAATTGAD
HTCAATTATTGNH		 Dap-seq
OMalley et al.(2016)
LMI1_col_a 		0.711 0.607
ATHB-51
M06928_2.00 		Arabidopsis thaliana
NDNCAATAATTGA
TCAATTATTGNHN		 Dap-seq
OMalley et al.(2016)
LMI1_colamp_a 		0.711 0.607
ATHB-22
M02041_2.00 		Arabidopsis thaliana
NNATAATWWWNNN
NNNWWWATTATNN		 PBM
Weirauch et al.(2014)
pTH5883 		0.709 0.643
estExt_gwp_gw1.C_70211
M02220_2.00 		Physcomitrella patens
HMATNANDNN
NNHNTNATKD		 PBM
Weirauch et al.(2014)
pTH8489 		0.693 0.804
ATHB-5
M06932_2.00 		Arabidopsis thaliana
NYAATMATTND
HNAATKATTRN		 Dap-seq
OMalley et al.(2016)
ATHB5_col_a 		0.677 0.804
ATHB-5
M06933_2.00 		Arabidopsis thaliana
NYAATMATTN
NAATKATTRN		 Dap-seq
OMalley et al.(2016)
ATHB5_colamp_a 		0.677 0.804
ATHB-5
M02684_2.00 		Arabidopsis thaliana
CAATVATTGVVSV
BSBBCAATBATTG		 SELEX
Mathelier et al.(2014)
MA0110.2 		0.677 0.804
ATHB-5
M10630_2.00 		Arabidopsis thaliana
CAATVATTG
CAATBATTG		 Transfac
Matys et al.(2006)
P$ATHB5_01 		0.677 0.804
ATHB-6
M02040_2.00 		Arabidopsis thaliana
HATNATTDN
NHAATNATD		 PBM
Weirauch et al.(2014)
pTH7670 		0.663 0.786
ATHB-16
M02050_2.00 		Arabidopsis thaliana
YAATMATT
AATKATTR		 PBM
Weirauch et al.(2014)
pTH7270 		0.663 0.786
ATHB-6
M06909_2.00 		Arabidopsis thaliana
NNNHATKATTR
YAATMATDNNN		 Dap-seq
OMalley et al.(2016)
ATHB6_col_a 		0.663 0.786
ATHB-6
M06910_2.00 		Arabidopsis thaliana
NCAATAATTRN
NYAATTATTGN		 Dap-seq
OMalley et al.(2016)
ATHB6_colamp_a 		0.663 0.786
HAT5
M06914_2.00 		Arabidopsis thaliana
NHAATAATTDW
WHAATTATTDN		 Dap-seq
OMalley et al.(2016)
HAT5_col_a 		0.657 0.804
HAT5
M06915_2.00 		Arabidopsis thaliana
WNYAATAATTRWDN
NHWYAATTATTRNW		 Dap-seq
OMalley et al.(2016)
HAT5_colamp_a 		0.657 0.804
HAT5
M02683_2.00 		Arabidopsis thaliana
SCAATAATTNNV
BNNAATTATTGS		 SELEX
Mathelier et al.(2014)
MA0008.2 		0.657 0.804
HAT5
M10624_2.00 		Arabidopsis thaliana
YSCAATAATTNNVN
NBNNAATTATTGSR		 Transfac
Matys et al.(2006)
P$ATHB1_01 		0.657 0.804
ATHB-12
M00865_2.00 		Arabidopsis thaliana
NNNNNNNN
NNNNNNNN		 PBM
Franco-Zorrilla et al.(2014)
ATHB12 		0.618 0.607
ATHB-12
M02045_2.00 		Arabidopsis thaliana
BHWWWWWWDV
BHWWWWWWDV		 PBM
Weirauch et al.(2014)
pTH7207 		0.618 0.607
Q39944_HELAN
M10802_2.00 		Helianthus annuus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HAHB4_01 		0.606 0.518
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
29822.m003500 Homeodomain 75 130

Links

Other Homeodomain family TFs
Other Ricinus communis TFs

780 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACRE_067850 Acremonium chrysogenum ACRE_067850 I 0.000
BBA_09189 Beauveria bassiana BBA_09189 I 0.000
BGHDH14_bgh05094 Blumeria graminis BGHDH14_bgh05094 I 0.000
A1O1_01931 Capronia coronata A1O1_01931 N 0.000
PV04_04136 Capronia semiimmersa PV04_04136 N 0.000
CHGG_07364 Chaetomium globosum CHGG_07364 I 0.000
CTHT_0068480 Chaetomium thermophilum CTHT_0068480 I 0.000
Z519_06584 Cladophialophora bantiana Z519_06584 N 0.000
G647_03586 Cladophialophora carrionii G647_03586 N 0.000
PV07_04943 Cladophialophora immunda PV07_04943 N 0.000
A1O7_05076 Cladophialophora yegresii A1O7_05076 N 0.000
CPUR_08028 Claviceps purpurea CPUR_08028 I 0.000
CCM_09080 Cordyceps militaris CCM_09080 I 0.000
HMPREF1541_08871 Cyphellophora europaea HMPREF1541_08871 N 0.000
EPUS_04641 Endocarpon pusillum EPUS_04641 N 0.000
UCREL1_10245 Eutypa lata UCREL1_10245 I 0.000
A1O9_13030 Exophiala aquamarina A1O9_13030 N 0.000
HMPREF1120_03433 Exophiala dermatitidis HMPREF1120_03433 N 0.000
PV11_01942 Exophiala sideris PV11_01942 N 0.000
PV05_02453 Exophiala xenobiotica PV05_02453 N 0.000
Z517_06070 Fonsecaea pedrosoi Z517_06070 N 0.000
NechaG22260 Fusarium solani NechaG22260 I 0.000
GGTG_06006 Gaeumannomyces graminis GGTG_06006 I 0.000
CMQ_7699 Grosmannia clavigera CMQ_7699 I 0.000
MGG_05343 Magnaporthe oryzae MGG_05343 I 0.000
MAPG_04263 Magnaporthe poae MAPG_04263 I 0.000
MAM_04875 Metarhizium album MAM_04875 I 0.000
MYCTH_2301920 Myceliophthora thermophila MYCTH_2301920 I 0.000
gw1.14.468.1 Nectria haematococca gw1.14.468.1 I 0.000
OCS_01944 Ophiocordyceps sinensis OCS_01944 I 0.000
F503_04220 Ophiostoma piceae uamh F503_04220 I 0.000
PODANS_2_4060 Podospora anserina PODANS_2_4060 I 0.000
GMDG_01905 Pseudogymnoascus destructans GMDG_01905 I 0.000
V499_05963 Pseudogymnoascus pannorum V499_05963 I 0.000
S40288_01569 Stachybotrys chartarum S40288_01569 I 0.000
S40285_00097 Stachybotrys chlorohalonata S40285_00097 I 0.000
THITE_2108095 Thielavia terrestris THITE_2108095 I 0.000
VHEMI08540 Torrubiella hemipterigena VHEMI08540 I 0.000
TRIATDRAFT_11573 Trichoderma atroviride TRIATDRAFT_11573 I 0.000
TRIREDRAFT_52368 Trichoderma reesei TRIREDRAFT_52368 I 0.000
TRIVIDRAFT_156582 Trichoderma virens TRIVIDRAFT_156582 I 0.000
VDBG_09402 Verticillium albo atrum VDBG_09402 I 0.000
VDBG_09402 Verticillium alfalfae VDBG_09402 I 0.000
VDAG_04640 Verticillium dahliae VDAG_04640 I 0.000