cassava18279.valid.m1 (Manihot esculenta)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 cassava18279.valid.m1 T227050_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HAT22
M06926_2.00 		Arabidopsis thaliana
NNYAATCATT
AATGATTRNN		 Dap-seq
OMalley et al.(2016)
HAT22_col_a 		0.831 0.912
HAT2
M06929_2.00 		Arabidopsis thaliana
NHAATGATTRN
NYAATCATTDN		 Dap-seq
OMalley et al.(2016)
HAT2_colamp_a 		0.793 0.789
HAT2
M06930_2.00 		Arabidopsis thaliana
WNYAATCATWD
HWATGATTRNW		 Dap-seq
OMalley et al.(2016)
HAT2_col_v31 		0.793 0.789
HAT1
M02047_2.00 		Arabidopsis thaliana
NMATGATTRN
NYAATCATKN		 PBM
Weirauch et al.(2014)
pTH8107 		0.792 0.754
HAT1
M06922_2.00 		Arabidopsis thaliana
NHAATGATTRNNWDW
WHWNNYAATCATTDN		 Dap-seq
OMalley et al.(2016)
HAT1_col_a 		0.792 0.754
HAT1
M06923_2.00 		Arabidopsis thaliana
NYAATCATTDN
NHAATGATTRN		 Dap-seq
OMalley et al.(2016)
HAT1_colamp_a 		0.792 0.754
ATHB-X
M06902_2.00 		Arabidopsis thaliana
HHAATRATTRN
NYAATYATTDD		 Dap-seq
OMalley et al.(2016)
ATHB18_col_a 		0.778 0.754
ATHB-X
M06903_2.00 		Arabidopsis thaliana
NYAATGATTRV
BYAATCATTRN		 Dap-seq
OMalley et al.(2016)
ATHB18_colamp_a 		0.778 0.754
HAT3
M00728_2.00 		Arabidopsis thaliana
DTGATTRV
BYAATCAH		 PBM
Chang et al.(2013)
pTH7400 		0.764 0.825
ATHB-4
M01065_2.00 		Arabidopsis thaliana
NBMTGCATRNN
NNYATGCAKVN		 PBM
Sullivan et al.(2014)
pTH8184 		0.764 0.807
ATHB-4
M02042_2.00 		Arabidopsis thaliana
NNWTNATTRN
NYAATNAWNN		 PBM
Weirauch et al.(2014)
pTH8667 		0.764 0.807
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava18279.valid.m1 Homeodomain 122 178

Links

Other Homeodomain family TFs
Other Manihot esculenta TFs

694 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGABI2DRAFT_191713 Agaricus bisporus AGABI2DRAFT_191713 N 0.000
M378DRAFT_8932 Amanita muscaria M378DRAFT_8932 N 0.000
BOTBODRAFT_26713 Botryobasidium botryosum BOTBODRAFT_26713 N 0.000
BOTBODRAFT_26714 Botryobasidium botryosum BOTBODRAFT_26714 N 0.000
CERSUDRAFT_111398 Ceriporiopsis subvermispora CERSUDRAFT_111398 N 0.000
CC1G_00050 Coprinopsis cinerea CC1G_00050 N 0.000
DICSQDRAFT_61352 Dichomitus squalens DICSQDRAFT_61352 N 0.000
FIBRA_01455 Fibroporia radiculosa FIBRA_01455 N 0.000
FOMPIDRAFT_138732 Fomitopsis pinicola FOMPIDRAFT_138732 N 0.000
GALMADRAFT_23139 Galerina marginata GALMADRAFT_23139 N 0.000
GLOTRDRAFT_55344 Gloeophyllum trabeum GLOTRDRAFT_55344 N 0.000
M413DRAFT_440930 Hebeloma cylindrosporum M413DRAFT_440930 N 0.000
e_gw1.4.2249.1 Heterobasidion annosum e_gw1.4.2249.1 N 0.000
HETIRDRAFT_240562 Heterobasidion irregulare HETIRDRAFT_240562 N 0.000
JAAARDRAFT_28293 Jaapia argillacea JAAARDRAFT_28293 N 0.000
K443DRAFT_672537 Laccaria amethystina K443DRAFT_672537 N 0.000
Moror_1059 Moniliophthora roreri Moror_1059 N 0.000
PAXRUDRAFT_13206 Paxillus rubicundulus PAXRUDRAFT_13206 N 0.000
PHACADRAFT_249397 Phanerochaete carnosa PHACADRAFT_249397 N 0.000
fgenesh1_pg.C_scaffold_2000701 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_2000701 N 0.000
PHLGIDRAFT_35648 Phlebiopsis gigantea PHLGIDRAFT_35648 N 0.000
PILCRDRAFT_811082 Piloderma croceum PILCRDRAFT_811082 N 0.000
PISMIDRAFT_670921 Pisolithus microcarpus PISMIDRAFT_670921 N 0.000
M404DRAFT_92668 Pisolithus tinctorius M404DRAFT_92668 N 0.000
PLEOSDRAFT_1029614 Pleurotus ostreatus PLEOSDRAFT_1029614 N 0.000
V565_035960 Rhizoctonia solani V565_035960 N 0.000
V565_033130 Rhizoctonia solani V565_033130 N 0.000
SCHCODRAFT_47142 Schizophyllum commune SCHCODRAFT_47142 N 0.000
SCLCIDRAFT_1210054 Scleroderma citrinum SCLCIDRAFT_1210054 N 0.000
M408DRAFT_220715 Serendipita vermifera M408DRAFT_220715 N 0.000
M408DRAFT_326089 Serendipita vermifera M408DRAFT_326089 N 0.000
SERLA73DRAFT_177169 Serpula lacrymans SERLA73DRAFT_177169 N 0.000
CY34DRAFT_808328 Suillus luteus CY34DRAFT_808328 N 0.000
BN946_scf184908.g73 Trametes cinnabarina BN946_scf184908.g73 N 0.000