estExt_gwp_gw1.C_700130 (Physcomitrella patens)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 estExt_gwp_gw1.C_700130 T227444_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-9
M06898_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
PHV_col_a 		0.856 0.875
ATHB-9
M02682_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 SELEX
Mathelier et al.(2014)
MA0573.1 		0.856 0.875
ATHB-9
M10623_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 Transfac
Matys et al.(2006)
P$ATHB9_01 		0.856 0.875
ATHB-15
M00864_2.00 		Arabidopsis thaliana
AATAATTACT
AGTAATTATT		 PBM
Franco-Zorrilla et al.(2014)
ICU4 		0.852 0.893
ATHB-15
M06899_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
ATHB15_col_a 		0.852 0.893
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
estExt_gwp_gw1.C_700130 Homeodomain 5 64

Links

Other Homeodomain family TFs
Other Physcomitrella patens TFs

334 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000006001 Ailuropoda melanoleuca ENSAMEG00000006001 N
ENSBTAP00000044076-D1 Bos grunniens ENSBTAP00000044076-D1 N
TERF1 Bos taurus ENSBTAG00000032982 N
TERF1 Callithrix jacchus ENSCJAG00000007714 N
TERF1 Canis familiaris ENSCAFG00000007975 N
TERF1 Cavia porcellus ENSCPOG00000009638 N
ENSCSAG00000013598 Chlorocebus sabaeus ENSCSAG00000013598 N
TERF1 Choloepus hoffmanni ENSCHOG00000002407 N
ENSDNOG00000011332 Dasypus novemcinctus ENSDNOG00000011332 N
Terf1 Dipodomys ordii ENSDORG00000003657 N
TERF1 Equus caballus ENSECAG00000011894 N
TERF1 Erinaceus europaeus ENSEEUG00000008963 N
TERF1 Felis catus ENSFCAG00000026385 N
ENSGGOG00000025393 Gorilla gorilla ENSGGOG00000025393 N
TERF1 Gorilla gorilla ENSGGOG00000026727 N
TERF1 Homo sapiens ENSG00000147601 N
ENSSTOG00000026069 Ictidomys tridecemlineatus ENSSTOG00000026069 N
ENSSTOG00000025051 Ictidomys tridecemlineatus ENSSTOG00000025051 N
ENSSTOG00000004560 Ictidomys tridecemlineatus ENSSTOG00000004560 N
TERF1 Loxodonta africana ENSLAFG00000004308 N
ENSP00000276603 Macaca fascicularis ENSP00000276603 N
TERF1 Macaca mulatta ENSMMUG00000023208 N
ENSMPUG00000010251 Mustela putorius furo ENSMPUG00000010251 N
Terf1 Mus musculus ENSMUSG00000025925 N
Myotis_brandtii_TERF1_10031667 Myotis brandtii Myotis_brandtii_TERF1_10031667 N
TERF1 Myotis lucifugus ENSMLUG00000012171 N
TERF1 Ornithorhynchus anatinus ENSOANG00000001722 N
ENSOCUG00000002793 Oryctolagus cuniculus ENSOCUG00000002793 N
ENSOGAG00000033284 Otolemur garnettii ENSOGAG00000033284 N
ENSOGAG00000005848 Otolemur garnettii ENSOGAG00000005848 N
ENSOARG00000005381 Ovis aries ENSOARG00000005381 N
TERF1 Pan troglodytes ENSPTRG00000022919 N
ENSPANG00000025943 Papio anubis ENSPANG00000025943 N
ENSPPYG00000018669 Pongo abelii ENSPPYG00000018669 N
ENSPPYG00000018261 Pongo abelii ENSPPYG00000018261 N
ENSPPYG00000003709 Pongo abelii ENSPPYG00000003709 N
TERF1 Procavia capensis ENSPCAG00000007698 N
TERF1 Pteropus vampyrus ENSPVAG00000003792 N
Terf1 Rattus norvegicus ENSRNOG00000007291 N
TERF1 Sus scrofa ENSSSCG00000006184 N
ENSTSYG00000006478 Tarsius syrichta ENSTSYG00000006478 N
TERF1 Tursiops truncatus ENSTTRG00000003745 N
TERF1 Vicugna pacos ENSVPAG00000000533 N