fgenesh2_pg.scaffold_1255000001 (Branchiostoma floridae)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 fgenesh2_pg.scaffold_1255000001 T227501_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.823 0.609
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.823 0.609
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.823 0.609
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.823 0.609
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.823 0.609
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.823 0.609
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.823 0.609
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.823 0.609
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.823 0.609
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.718 0.348
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.718 0.348
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.718 0.348
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_1255000001 Homeodomain 54 99

Links

Other Homeodomain family TFs
Other Branchiostoma floridae TFs

1244 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMXG00000000561 Astyanax mexicanus ENSAMXG00000000561 N 0.000
aebp2 Danio rerio ENSDARG00000006038 N 0.000
ENSFALG00000001055 Ficedula albicollis ENSFALG00000001055 N 0.000
ENSGMOG00000005290 Gadus morhua ENSGMOG00000005290 N 0.000
ENSGACG00000010024 Gasterosteus aculeatus ENSGACG00000010024 N 0.000
aebp2 Gasterosteus aculeatus ENSGACG00000019249 N 0.000
ENSLOCG00000015421 Lepisosteus oculatus ENSLOCG00000015421 N 0.000
ENSONIG00000008507 Oreochromis niloticus ENSONIG00000008507 N 0.000
ENSORLG00000004512 Oryzias latipes ENSORLG00000004512 N 0.000
aebp2 Oryzias latipes ENSORLG00000012453 N 0.000
ENSPFOG00000005718 Poecilia formosa ENSPFOG00000005718 N 0.000
ENSPFOG00000008425 Poecilia formosa ENSPFOG00000008425 N 0.000
aebp2 Takifugu rubripes ENSTRUG00000010318 N 0.000
ENSXMAG00000001328 Xiphophorus maculatus ENSXMAG00000001328 N 0.000
ENSXMAG00000016412 Xiphophorus maculatus ENSXMAG00000016412 N 0.000