Sakowv30004430m.g (Saccoglossus kowalevskii)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Sakowv30004430m.g T227867_2.00 JGI:Metazome (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.749 0.435
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.749 0.435
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.749 0.435
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.749 0.435
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.749 0.435
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.749 0.435
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.749 0.435
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.749 0.435
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.749 0.435
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.730 0.543
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.730 0.543
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.730 0.543
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
23944944_peptide Homeodomain 120 165

Links

Other Homeodomain family TFs
Other Saccoglossus kowalevskii TFs

1236 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_29935 Aegilops tauschii F775_29935 N 0.000
Aquca_013_00537 Aquilegia coerulea Aquca_013_00537 I 0.000
Aquca_052_00053 Aquilegia coerulea Aquca_052_00053 I 0.000
Aquca_122_00004 Aquilegia coerulea Aquca_122_00004 N 0.000
AtGRF5 Arabidopsis lyrata fgenesh2_kg.3__1504__AT3G13960.1 I 0.000
GRF5 Arabidopsis thaliana AT3G13960 I 0.000
Bostr.28625s0309 Boechera stricta Bostr.28625s0309 I 0.000
BRADI1G28400 Brachypodium distachyon BRADI1G28400 N 0.000
BRADI2G14320 Brachypodium distachyon BRADI2G14320 N 0.000
Bra005268 Brassica rapa Bra005268 N 0.000
Bra027384 Brassica rapa Bra027384 I 0.000
PK16254.1 Cannabis sativa PK16254.1 N 0.000
Cagra.0736s0034 Capsella grandiflora Cagra.0736s0034 I 0.000
Carubv10013860m.g Capsella rubella Carubv10013860m.g I 0.000
evm.TU.supercontig_25.118 Carica papaya evm.TU.supercontig_25.118 I 0.000
Cla006913 Citrullus lanatus Cla006913 I 0.000
Ciclev10011856m.g Citrus clementina Ciclev10011856m.g N 0.000
Ciclev10032065m.g Citrus clementina Ciclev10032065m.g I 0.000
orange1.1g020051m.g Citrus sinensis orange1.1g020051m.g I 0.000
Cucsa.017410 Cucumis sativus Cucsa.017410 I 0.000
Thhalv10020873m.g Eutrema salsugineum Thhalv10020873m.g I 0.000
gene02620-v1.0-hybrid Fragaria vesca gene02620-v1.0-hybrid N 0.000
gene12741-v1.0-hybrid Fragaria vesca gene12741-v1.0-hybrid N 0.000
gene12549-v1.0-hybrid Fragaria vesca gene12549-v1.0-hybrid I 0.000
GLYMA06G13960 Glycine max GLYMA06G13960 N 0.000
GLYMA04G40880 Glycine max GLYMA04G40880 N 0.000
Gorai.013G184200 Gossypium raimondii Gorai.013G184200 I 0.000
Gorai.004G204600 Gossypium raimondii Gorai.004G204600 I 0.000
Gorai.003G057700 Gossypium raimondii Gorai.003G057700 I 0.000
MLOC_70581 Hordeum vulgare MLOC_70581 N 0.000
LPERR07G11440 Leersia perrieri LPERR07G11440 N 0.000
Lus10009533.g Linum usitatissimum Lus10009533.g I 0.000
Lus10020352.g Linum usitatissimum Lus10020352.g I 0.000
MDP0000814056 Malus domestica MDP0000814056 N 0.000
cassava41970.valid.m1 Manihot esculenta cassava41970.valid.m1 I 0.000
cassava30116.valid.m1 Manihot esculenta cassava30116.valid.m1 I 0.000
cassava14256.m1 Manihot esculenta cassava14256.m1 I 0.000
mgf002023m Mimulus guttatus mgf002023m I 0.000
mgf020920m Mimulus guttatus mgf020920m I 0.000
GSMUA_Achr2G04650_001 Musa acuminata GSMUA_Achr2G04650_001 I 0.000
GSMUA_Achr10G06370_001 Musa acuminata GSMUA_Achr10G06370_001 I 0.000
GSMUA_Achr8G12060_001 Musa acuminata GSMUA_Achr8G12060_001 N 0.000
OBART07G13680 Oryza barthii OBART07G13680 N 0.000
OB07G19720 Oryza brachyantha OB07G19720 N 0.000
OB03G39940 Oryza brachyantha OB03G39940 I 0.000
ORGLA07G0115500 Oryza glaberrima ORGLA07G0115500 N 0.000
OGLUM07G12780 Oryza glumaepatula OGLUM07G12780 N 0.000
BGIOSGA025662 Oryza indica BGIOSGA025662 N 0.000
OLONG_025015 Oryza longistaminata OLONG_025015 N 0.000
OMERI08G17030 Oryza meridionalis OMERI08G17030 N 0.000
OMERI07G10850 Oryza meridionalis OMERI07G10850 N 0.000
ONIVA07G11690 Oryza nivara ONIVA07G11690 N 0.000
OPUNC07G12320 Oryza punctata OPUNC07G12320 N 0.000
ORUFI07G13880 Oryza rufipogon ORUFI07G13880 N 0.000
GRF11 Oryza sativa OS07G0467500 N 0.000
Pavir.Aa00919 Panicum virgatum Pavir.Aa00919 I 0.000
Pavir.Bb02610 Panicum virgatum Pavir.Bb02610 N 0.000
Pavir.Ba01449 Panicum virgatum Pavir.Ba01449 N 0.000
gw1.246.118.1 Physcomitrella patens gw1.246.118.1 N 0.000
gw1.344.18.1 Physcomitrella patens gw1.344.18.1 N 0.000
POPTR_0012s02950 Populus trichocarpa POPTR_0012s02950 N 0.000
POPTR_0013s07500 Populus trichocarpa POPTR_0013s07500 I 0.000
Pm019687 Prunus mume Pm019687 N 0.000
Pm019573 Prunus mume Pm019573 I 0.000
PRUPE_ppa024293mg Prunus persica PRUPE_ppa024293mg N 0.000
PRUPE_ppa022199mg Prunus persica PRUPE_ppa022199mg I 0.000
30190.m011066 Ricinus communis 30190.m011066 I 0.000
30073.m002312 Ricinus communis 30073.m002312 I 0.000
SapurV1A.0568s0060 Salix purpurea SapurV1A.0568s0060 I 0.000
SapurV1A.0755s0030 Salix purpurea SapurV1A.0755s0030 N 0.000
SELMODRAFT_442384 Selaginella moellendorffii SELMODRAFT_442384 I 0.000
SELMODRAFT_442763 Selaginella moellendorffii SELMODRAFT_442763 I 0.000
Si030809m.g Setaria italica Si030809m.g N 0.000
Solyc08g005430.2 Solanum lycopersicum Solyc08g005430.2 I 0.000
Solyc08g075950.1 Solanum lycopersicum Solyc08g075950.1 I 0.000
Solyc12g096070.1 Solanum lycopersicum Solyc12g096070.1 I 0.000
PGSC0003DMG400030881 Solanum tuberosum PGSC0003DMG400030881 I 0.000
PGSC0003DMG400029384 Solanum tuberosum PGSC0003DMG400029384 I 0.000
PGSC0003DMG400018491 Solanum tuberosum PGSC0003DMG400018491 I 0.000
Sb02g032860 Sorghum bicolor Sb02g032860 N 0.000
TCM_025561 Theobroma cacao TCM_025561 I 0.000
Traes_2AS_CA4D79100 Triticum aestivum Traes_2AS_CA4D79100 N 0.000
Traes_2BS_E3CBE0B73 Triticum aestivum Traes_2BS_E3CBE0B73 N 0.000
Traes_2DL_243DA9D84 Triticum aestivum Traes_2DL_243DA9D84 N 0.000
VIT_08s0007g03760 Vitis vinifera VIT_08s0007g03760 N 0.000
AtGRF7 Vitis vinifera VIT_16s0098g01080 N 0.000
VIT_16s0039g01450 Vitis vinifera VIT_16s0039g01450 I 0.000
GRMZM2G096709 Zea mays GRMZM2G096709 N 0.000
GRMZM5G893117 Zea mays GRMZM5G893117 I 0.000
GRMZM2G067743 Zea mays GRMZM2G067743 I 0.000
GRMZM2G004619 Zea mays GRMZM2G004619 N 0.000