Cagra.2519s0040 (Capsella grandiflora)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Cagra.2519s0040 T228234_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-9
M06898_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
PHV_col_a 		0.815 0.930
ATHB-9
M02682_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 SELEX
Mathelier et al.(2014)
MA0573.1 		0.815 0.930
ATHB-9
M10623_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 Transfac
Matys et al.(2006)
P$ATHB9_01 		0.815 0.930
ATHB-15
M00864_2.00 		Arabidopsis thaliana
AATAATTACT
AGTAATTATT		 PBM
Franco-Zorrilla et al.(2014)
ICU4 		0.810 0.877
ATHB-15
M06899_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
ATHB15_col_a 		0.810 0.877
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.2519s0040.1.p Homeodomain 23 83

Links

Other Homeodomain family TFs
Other Capsella grandiflora TFs

333 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fgenesh1_pm.00083_#_435 Aspergillus carbonarius fgenesh1_pm.00083_#_435 N 0.000
ANIA_00658 Aspergillus nidulans CADANIAG00002017 N 0.000
EURHEDRAFT_462589 Aspergillus ruber EURHEDRAFT_462589 N 0.000
ATEG_00518 Aspergillus terreus CADATEAG00005765 N 0.000
BDDG_02749 Blastomyces dermatitidis BDDG_02749 N 0.000
PVAR5_7087 Byssochlamys spectabilis PVAR5_7087 N 0.000
CIMG_05930 Coccidioides immitis CIMG_05930 N 0.000
MCYG_07079 Microsporum canis MCYG_07079 N 0.000
MGYG_03584 Microsporum gypseum MGYG_03584 N 0.000
PABG_06777 Paracoccidioides brasiliensis PABG_06777 N 0.000
PAAG_00516 Paracoccidioides sp lutzii PAAG_00516 N 0.000
Pc13g12180 Penicillium chrysogenum Pc13g12180 N 0.000
PDIP_26400 Penicillium digitatum PDIP_26400 N 0.000
PMAA_067870 Penicillium marneffei PMAA_067870 N 0.000
PDE_00153 Penicillium oxalicum PDE_00153 N 0.000
PCH_Pc13g12180 Penicillium rubens PCH_Pc13g12180 N 0.000
PMAA_067870 Talaromyces marneffei PMAA_067870 N 0.000
TSTA_087950 Talaromyces stipitatus TSTA_087950 N 0.000
TEQG_08314 Trichophyton equinum TEQG_08314 N 0.000
H101_04932 Trichophyton interdigitale H101_04932 N 0.000
H102_00310 Trichophyton rubrum H102_00310 N 0.000
H105_00305 Trichophyton soudanense H105_00305 N 0.000
TESG_05188 Trichophyton tonsurans TESG_05188 N 0.000
UREG_04415 Uncinocarpus reesii UREG_04415 N 0.000