Cagra.4122s0002 (Capsella grandiflora)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Cagra.4122s0002 T228245_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-9
M06898_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
PHV_col_a 		0.866 0.929
ATHB-9
M02682_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 SELEX
Mathelier et al.(2014)
MA0573.1 		0.866 0.929
ATHB-9
M10623_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 Transfac
Matys et al.(2006)
P$ATHB9_01 		0.866 0.929
ATHB-15
M00864_2.00 		Arabidopsis thaliana
AATAATTACT
AGTAATTATT		 PBM
Franco-Zorrilla et al.(2014)
ICU4 		0.862 0.982
ATHB-15
M06899_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
ATHB15_col_a 		0.862 0.982
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.4122s0002.1.p Homeodomain 15 74

Links

Other Homeodomain family TFs
Other Capsella grandiflora TFs

335 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00110p00030150 Amborella trichopoda AMTR_s00110p00030150 I 0.000
AMTR_s00045p00141060 Amborella trichopoda AMTR_s00045p00141060 I 0.000
Aquca_003_00259 Aquilegia coerulea Aquca_003_00259 I 0.000
PIF3 Arabidopsis lyrata fgenesh2_kg.1__1002__AT1G09530.2 I 0.000
PIF3 Arabidopsis thaliana AT1G09530 D 0.000
Bostr.25494s0011 Boechera stricta Bostr.25494s0011 I 0.000
BRADI2G11100 Brachypodium distachyon BRADI2G11100 I 0.000
Bo5g009910 Brassica oleracea Bo5g009910 I 0.000
Bo8g111120 Brassica oleracea Bo8g111120 I 0.000
Bra000283 Brassica rapa Bra000283 I 0.000
Bra020017 Brassica rapa Bra020017 I 0.000
Bra031668 Brassica rapa Bra031668 I 0.000
PK05451.1 Cannabis sativa PK05451.1 D 0.000
Cagra.4395s0138 Capsella grandiflora Cagra.4395s0138 I 0.000
Carubv10008815m.g Capsella rubella Carubv10008815m.g I 0.000
Ca_03591 Cicer arietinum Ca_03591 I 0.000
Cla018863 Citrullus lanatus Cla018863 I 0.000
Cla020302 Citrullus lanatus Cla020302 I 0.000
Ciclev10027890m.g Citrus clementina Ciclev10027890m.g I 0.000
orange1.1g006040m.g Citrus sinensis orange1.1g006040m.g I 0.000
Cucsa.113040 Cucumis sativus Cucsa.113040 I 0.000
Cucsa.090320 Cucumis sativus Cucsa.090320 I 0.000
Eucgr.B01825 Eucalyptus grandis Eucgr.B01825 I 0.000
Thhalv10007343m.g Eutrema salsugineum Thhalv10007343m.g I 0.000
gene22963-v1.0-hybrid Fragaria vesca gene22963-v1.0-hybrid I 0.000
GLYMA02G45150 Glycine max GLYMA02G45150 I 0.000
GLYMA20G22291 Glycine max GLYMA20G22291 I 0.000
GLYMA19G41261 Glycine max GLYMA19G41261 I 0.000
GLYMA14G03600 Glycine max GLYMA14G03600 I 0.000
GLYMA10G28290 Glycine max GLYMA10G28290 I 0.000
GLYMA03G38675 Glycine max GLYMA03G38675 I 0.000
Gorai.007G309400 Gossypium raimondii Gorai.007G309400 I 0.000
MLOC_68598 Hordeum vulgare MLOC_68598 I 0.000
LPERR01G10950 Leersia perrieri LPERR01G10950 I 0.000
LPERR05G02370 Leersia perrieri LPERR05G02370 I 0.000
Lus10020727.g Linum usitatissimum Lus10020727.g I 0.000
Lus10029805.g Linum usitatissimum Lus10029805.g I 0.000
chr5.CM0048.80.nd Lotus japonicus chr5.CM0048.80.nd I 0.000
MDP0000290263 Malus domestica MDP0000290263 I 0.000
cassava17681.valid.m1 Manihot esculenta cassava17681.valid.m1 I 0.000
cassava12867.valid.m1 Manihot esculenta cassava12867.valid.m1 I 0.000
cassava17680.valid.m1 Manihot esculenta cassava17680.valid.m1 I 0.000
MTR_7g111320 Medicago truncatula MTR_7g111320 I 0.000
MTR_1g084980 Medicago truncatula MTR_1g084980 I 0.000
mgf017958m Mimulus guttatus mgf017958m I 0.000
mgf009653m Mimulus guttatus mgf009653m I 0.000
GSMUA_Achr5G18390_001 Musa acuminata GSMUA_Achr5G18390_001 I 0.000
OBART01G11950 Oryza barthii OBART01G11950 I 0.000
OB01G21830 Oryza brachyantha OB01G21830 I 0.000
OB05G12600 Oryza brachyantha OB05G12600 I 0.000
ORGLA08G0194500 Oryza glaberrima ORGLA08G0194500 I 0.000
OGLUM01G13370 Oryza glumaepatula OGLUM01G13370 I 0.000
OGLUM05G02640 Oryza glumaepatula OGLUM05G02640 I 0.000
BGIOSGA001870 Oryza indica BGIOSGA001870 I 0.000
BGIOSGA019157 Oryza indica BGIOSGA019157 I 0.000
OMERI05G02570 Oryza meridionalis OMERI05G02570 I 0.000
ONIVA05G02540 Oryza nivara ONIVA05G02540 I 0.000
ONIVA01G14150 Oryza nivara ONIVA01G14150 I 0.000
OPUNC01G11630 Oryza punctata OPUNC01G11630 I 0.000
OPUNC05G02500 Oryza punctata OPUNC05G02500 I 0.000
ORUFI05G02750 Oryza rufipogon ORUFI05G02750 I 0.000
OS01G0286100 Oryza sativa OS01G0286100 I 0.000
APG Oryza sativa OS05G0139100 I 0.000
Pavir.Ea01048 Panicum virgatum Pavir.Ea01048 I 0.000
Pavir.Ca01237 Panicum virgatum Pavir.Ca01237 I 0.000
PDK_20s1486002g002 Phoenix dactylifera PDK_20s1486002g002 I 0.000
PDK_20s1306831g002 Phoenix dactylifera PDK_20s1306831g002 I 0.000
PDK_20s1775531g001 Phoenix dactylifera PDK_20s1775531g001 I 0.000
estExt_fgenesh1_pg.C_690022 Physcomitrella patens estExt_fgenesh1_pg.C_690022 I 0.000
gw1.147.92.1 Physcomitrella patens gw1.147.92.1 I 0.000
e_gw1.84.236.1 Physcomitrella patens e_gw1.84.236.1 I 0.000
estExt_fgenesh1_pg.C_680048 Physcomitrella patens estExt_fgenesh1_pg.C_680048 I 0.000
POPTR_0005s00360 Populus trichocarpa POPTR_0005s00360 I 0.000
POPTR_0013s00310 Populus trichocarpa POPTR_0013s00310 I 0.000
Pm003265 Prunus mume Pm003265 I 0.000
PRUPE_ppa001899mg Prunus persica PRUPE_ppa001899mg I 0.000
30128.m008988 Ricinus communis 30128.m008988 I 0.000
SapurV1A.0442s0220 Salix purpurea SapurV1A.0442s0220 I 0.000
SELMODRAFT_39143 Selaginella moellendorffii SELMODRAFT_39143 I 0.000
SELMODRAFT_114141 Selaginella moellendorffii SELMODRAFT_114141 I 0.000
SELMODRAFT_116654 Selaginella moellendorffii SELMODRAFT_116654 I 0.000
SELMODRAFT_118904 Selaginella moellendorffii SELMODRAFT_118904 I 0.000
SELMODRAFT_29179 Selaginella moellendorffii SELMODRAFT_29179 I 0.000
Si000698m.g Setaria italica Si000698m.g I 0.000
Si021472m.g Setaria italica Si021472m.g I 0.000
Solyc01g102300.2 Solanum lycopersicum Solyc01g102300.2 I 0.000
PGSC0003DMG400018280 Solanum tuberosum PGSC0003DMG400018280 I 0.000
Sb09g003090 Sorghum bicolor Sb09g003090 I 0.000
TCM_026851 Theobroma cacao TCM_026851 I 0.000
Traes_1BS_D1FCBFBE8 Triticum aestivum Traes_1BS_D1FCBFBE8 I 0.000
Traes_1DS_55E91A134 Triticum aestivum Traes_1DS_55E91A134 I 0.000
PIF3 Vitis vinifera VIT_14s0060g00260 I 0.000
GRMZM2G387528 Zea mays GRMZM2G387528 I 0.000
GRMZM2G115960 Zea mays GRMZM2G115960 I 0.000