Carubv10004551m.g (Capsella rubella)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Carubv10004551m.g T228287_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.838 0.688
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.626 0.542
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.606 0.417
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.606 0.417
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.606 0.417
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.606 0.417
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10004551m Homeodomain 326 376

Links

Other Homeodomain family TFs
Other Capsella rubella TFs

1012 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
M437DRAFT_58247 Aureobasidium melanogenum M437DRAFT_58247 N
M438DRAFT_341722 Aureobasidium pullulans M438DRAFT_341722 N
AUEXF2481DRAFT_35357 Aureobasidium subglaciale AUEXF2481DRAFT_35357 N
BAUCODRAFT_71053 Baudoinia compniacensis BAUCODRAFT_71053 N
COCC4DRAFT_198330 Bipolaris maydis COCC4DRAFT_198330 N
COCMIDRAFT_31558 Bipolaris oryzae COCMIDRAFT_31558 N
COCSADRAFT_298423 Bipolaris sorokiniana COCSADRAFT_298423 N
COCVIDRAFT_42182 Bipolaris victoriae COCVIDRAFT_42182 N
COCCADRAFT_40248 Bipolaris zeicola COCCADRAFT_40248 N
Bcin02g05110 Botrytis cinerea Bcin02g05110 N
PVAR5_1909 Byssochlamys spectabilis PVAR5_1909 N
A1O1_06094 Capronia coronata A1O1_06094 N
A1O3_05625 Capronia epimyces A1O3_05625 N
PV04_05609 Capronia semiimmersa PV04_05609 N
Z519_10549 Cladophialophora bantiana Z519_10549 N
G647_02028 Cladophialophora carrionii G647_02028 N
PV07_08163 Cladophialophora immunda PV07_08163 N
A1O5_09655 Cladophialophora psammophila A1O5_09655 N
A1O7_03735 Cladophialophora yegresii A1O7_03735 N
W97_04778 Coniosporium apollinis W97_04778 N
HMPREF1541_01554 Cyphellophora europaea HMPREF1541_01554 N
DOTSEDRAFT_73264 Dothistroma septosporum DOTSEDRAFT_73264 N
EPUS_07060 Endocarpon pusillum EPUS_07060 N
A1O9_00579 Exophiala aquamarina A1O9_00579 N
HMPREF1120_03931 Exophiala dermatitidis HMPREF1120_03931 N
PV10_00661 Exophiala mesophila PV10_00661 N
PV06_04914 Exophiala oligosperma PV06_04914 N
PV11_05067 Exophiala sideris PV11_05067 N
PV08_10923 Exophiala spinifera PV08_10923 N
PV05_06830 Exophiala xenobiotica PV05_06830 N
Z517_11562 Fonsecaea pedrosoi Z517_11562 N
LEMA_P007270.1 Leptosphaeria maculans LEMA_P007270.1 N
MBM_03061 Marssonina brunnea MBM_03061 N
estExt_Genewise1Plus.C_120201 Mycosphaerella fijiensis estExt_Genewise1Plus.C_120201 N
e_gw1.6.106.1 Mycosphaerella graminicola e_gw1.6.106.1 N
UCRNP2_7309 Neofusicoccum parvum UCRNP2_7309 N
OIDMADRAFT_168714 Oidiodendron maius OIDMADRAFT_168714 N
SNOG_03309 Phaeosphaeria nodorum SNOG_03309 N
MYCFIDRAFT_139431 Pseudocercospora fijiensis MYCFIDRAFT_139431 N
GMDG_05496 Pseudogymnoascus destructans GMDG_05496 N
V499_07479 Pseudogymnoascus pannorum V499_07479 N
PTRG_11568 Pyrenophora triticirepentis PTRG_11568 N
Z518_04782 Rhinocladiella mackenziei Z518_04782 N
SBOR_1756 Sclerotinia borealis SBOR_1756 N
SS1G_11145 Sclerotinia sclerotiorum SS1G_11145 N
SETTUDRAFT_117439 Setosphaeria turcica SETTUDRAFT_117439 N
SEPMUDRAFT_149101 Sphaerulina musiva SEPMUDRAFT_149101 N
SNOG_03308 Stagonospora nodorum SNOG_03308 N
Mycgr3G43295 Zymoseptoria tritici Mycgr3G43295 N