CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Ciclev10017539m.g *(Citrus clementina)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00046 (Homeobox)	IPR001356	Ciclev10017539m.g	T228399_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
HAT5 M06914_2.00	Arabidopsis thaliana	NHAATAATTDW	WHAATTATTDN	Dap-seq OMalley et al.(2016) HAT5_col_a	0.858	0.947
HAT5 M06915_2.00	Arabidopsis thaliana	WNYAATAATTRWDN	NHWYAATTATTRNW	Dap-seq OMalley et al.(2016) HAT5_colamp_a	0.858	0.947
HAT5 M02683_2.00	Arabidopsis thaliana	SCAATAATTNNV	BNNAATTATTGS	SELEX Mathelier et al.(2014) MA0008.2	0.858	0.947
HAT5 M10624_2.00	Arabidopsis thaliana	YSCAATAATTNNVN	NBNNAATTATTGSR	Transfac Matys et al.(2006) P$ATHB1_01	0.858	0.947
estExt_gwp_gw1.C_70211 M02220_2.00	Physcomitrella patens	HMATNANDNN	NNHNTNATKD	PBM Weirauch et al.(2014) pTH8489	0.813	0.825
ATHB-6 M02040_2.00	Arabidopsis thaliana	HATNATTDN	NHAATNATD	PBM Weirauch et al.(2014) pTH7670	0.813	0.789
ATHB-16 M02050_2.00	Arabidopsis thaliana	YAATMATT	AATKATTR	PBM Weirauch et al.(2014) pTH7270	0.813	0.789
ATHB-6 M06909_2.00	Arabidopsis thaliana	NNNHATKATTR	YAATMATDNNN	Dap-seq OMalley et al.(2016) ATHB6_col_a	0.813	0.789
ATHB-6 M06910_2.00	Arabidopsis thaliana	NCAATAATTRN	NYAATTATTGN	Dap-seq OMalley et al.(2016) ATHB6_colamp_a	0.813	0.789
ATHB-13 M06900_2.00	Arabidopsis thaliana	HYAATAATTDD	HHAATTATTRD	Dap-seq OMalley et al.(2016) ATHB13_col_a	0.796	0.772
ATHB-13 M06901_2.00	Arabidopsis thaliana	NYAATAATTRW	WYAATTATTRN	Dap-seq OMalley et al.(2016) ATHB13_colamp_a	0.796	0.772
ATHB-5 M06932_2.00	Arabidopsis thaliana	NYAATMATTND	HNAATKATTRN	Dap-seq OMalley et al.(2016) ATHB5_col_a	0.796	0.772
ATHB-5 M06933_2.00	Arabidopsis thaliana	NYAATMATTN	NAATKATTRN	Dap-seq OMalley et al.(2016) ATHB5_colamp_a	0.796	0.772
ATHB-5 M02684_2.00	Arabidopsis thaliana	CAATVATTGVVSV	BSBBCAATBATTG	SELEX Mathelier et al.(2014) MA0110.2	0.796	0.772
ATHB-5 M10630_2.00	Arabidopsis thaliana	CAATVATTG	CAATBATTG	Transfac Matys et al.(2006) P$ATHB5_01	0.796	0.772
ATHB-21 M06907_2.00	Arabidopsis thaliana	NNWHCAATWATTDN	NHAATWATTGDWNN	Dap-seq OMalley et al.(2016) ATHB21_col_a	0.723	0.667
ATHB-21 M06908_2.00	Arabidopsis thaliana	WWDDNNNHAATWATTGDTNN	NNAHCAATWATTDNNNHHWW	Dap-seq OMalley et al.(2016) ATHB21_colamp_a	0.723	0.667
HB-5 M06924_2.00	Arabidopsis thaliana	NNAHCAATWATTKDNNNHWWH	DWWDNNNHMAATWATTGDTNN	Dap-seq OMalley et al.(2016) ATHB40_col_a	0.722	0.684
HB-5 M06925_2.00	Arabidopsis thaliana	HHAATWATTGDWNN	NNWHCAATWATTDD	Dap-seq OMalley et al.(2016) ATHB40_colamp_a	0.722	0.684
ATHB-53 M06934_2.00	Arabidopsis thaliana	HMAATAATTRD	HYAATTATTKD	Dap-seq OMalley et al.(2016) ATHB53_col_a	0.718	0.649
ATHB-53 M06935_2.00	Arabidopsis thaliana	NNWHCAATWATTDDN	NHHAATWATTGDWNN	Dap-seq OMalley et al.(2016) ATHB53_colamp_a	0.718	0.649
PK20392.1 M01250_2.00	Cannabis sativa	NHAATMATDN	NHATKATTDN	PBM Lambert et al.(2019) pTH11331	0.657	0.807
PK20392.1 M01251_2.00	Cannabis sativa	NHAATMATDN	NHATKATTDN	PBM Lambert et al.(2019) pTH11332	0.657	0.807
ATHB-20 M06912_2.00	Arabidopsis thaliana	HYAATAATTRD	HYAATTATTRD	Dap-seq OMalley et al.(2016) ATHB20_col_a	0.637	0.772
ATHB-20 M06913_2.00	Arabidopsis thaliana	HYAATMATTRD	HYAATKATTRD	Dap-seq OMalley et al.(2016) ATHB20_colamp_a	0.637	0.772
For this family, TFs with SR scores > 0.599* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Ciclev10017539m	Homeodomain	63	119	PEKKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKT

Links
Other Homeodomain family TFs
Other *Citrus clementina* TFs

802 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
nAv.1.0.1.g08193	Acanthocheilonema viteae	nAv.1.0.1.g08193	I	0.000
ANCCAN_26375	Ancylostoma caninum	ANCCAN_26375	I	0.000
ANCCEY_00898	Ancylostoma ceylanicum	ANCCEY_00898	I	0.000
ANCDUO_18427	Ancylostoma duodenale	ANCDUO_18427	I	0.000
ACAC_0000147901	Angiostrongylus cantonensis	ACAC_0000147901	I	0.000
ACOC_0000995801	Angiostrongylus costaricensis	ACOC_0000995801	I	0.000
ASIM_0002143001	Anisakis simplex	ASIM_0002143001	I	0.000
ASU_09163	Ascaris suum	ASU_09163	I	0.000
Bm7134	Brugia malayi	Bm7134	I	0.000
BTMF_0001264901	Brugia timori	BTMF_0001264901	I	0.000
BXY_0595700	Bursaphelenchus xylophilus	BXY_0595700	I	0.000
CBN05533	Caenorhabditis brenneri	CBN05533	I	0.000
Y75B8A.6	Caenorhabditis elegans	WBGene00013543	D	0.000
CRE24477	Caenorhabditis remanei	CRE24477	I	0.000
nDi.2.2.2.g00651	Dirofilaria immitis	nDi.2.2.2.g00651	I	0.000
EEL_0000525201	Elaeophora elaphi	EEL_0000525201	I	0.000
EVEC_0001194701	Enterobius vermicularis	EVEC_0001194701	I	0.000
GPLIN_001307100	Globodera pallida	GPLIN_001307100	I	0.000
HCOI02160700	Haemonchus contortus	HCOI02160700	I	0.000
HCOI01068300	Haemonchus contortus	HCOI01068300	I	0.000
HPLM_0000711501	Haemonchus placei	HPLM_0000711501	I	0.000
nLs.2.1.2.g02012	Litomosoides sigmodontis	nLs.2.1.2.g02012	I	0.000
LOAG_00893	Loa loa	LOAG_00893	I	0.000
maker-nMf.1.1.scaf00003-augustus-gene-0.28	Meloidogyne floridensis	maker-nMf.1.1.scaf00003-augustus-gene-0.28	I	0.000
MhA1_Contig45.frz3.gene23	Meloidogyne hapla	MhA1_Contig45.frz3.gene23	I	0.000
Minc01117	Meloidogyne incognita	Minc01117	I	0.000
NECAME_17957	Necator americanus	NECAME_17957	I	0.000
OFLC_0000081601	Onchocerca flexuosa	OFLC_0000081601	I	0.000
nOo.2.0.1.g00486	Onchocerca ochengi	nOo.2.0.1.g00486	I	0.000
WBGene00245177	Onchocerca volvulus	WBGene00245177	I	0.000
PTRK_0000092500	Parastrongyloides trichosuri	PTRK_0000092500	I	0.000
scaffold299-EXSNAP2012.1	Pristionchus exspectatus	scaffold299-EXSNAP2012.1	I	0.000
RSKR_0000225500	Rhabditophanes kr3021	RSKR_0000225500	I	0.000
L596_g2693	Steinernema carpocapsae	L596_g2693	I	0.000
L889_g11692	Steinernema feltiae	L889_g11692	I	0.000
L893_g11169	Steinernema glaseri	L893_g11169	I	0.000
L898_g2249	Steinernema monticolum	L898_g2249	I	0.000
L892_g8723	Steinernema scapterisci	L892_g8723	I	0.000
SPAL_0001350300	Strongyloides papillosus	SPAL_0001350300	I	0.000
SSTP_0000713800	Strongyloides stercoralis	SSTP_0000713800	I	0.000
SVE_1815200	Strongyloides venezuelensis	SVE_1815200	I	0.000
SMUV_0000924801	Syphacia muris	SMUV_0000924801	I	0.000
TELCIR_14928	Teladorsagia circumcincta	TELCIR_14928	I	0.000
TCLT_0000655501	Thelazia callipaeda	TCLT_0000655501	I	0.000
WUBG_12123	Wuchereria bancrofti	WUBG_12123	I	0.000

Ciclev10017539m.g (Citrus clementina) Homeodomain

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

802 Related TFs

Ciclev10017539m.g **(Citrus clementina)
Homeodomain**