Gorai.007G051100 (Gossypium raimondii)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Gorai.007G051100 T228727_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HB-5
M06924_2.00 		Arabidopsis thaliana
NNAHCAATWATTKDNNNHWWH
DWWDNNNHMAATWATTGDTNN		 Dap-seq
OMalley et al.(2016)
ATHB40_col_a 		0.816 0.821
HB-5
M06925_2.00 		Arabidopsis thaliana
HHAATWATTGDWNN
NNWHCAATWATTDD		 Dap-seq
OMalley et al.(2016)
ATHB40_colamp_a 		0.816 0.821
ATHB-53
M06934_2.00 		Arabidopsis thaliana
HMAATAATTRD
HYAATTATTKD		 Dap-seq
OMalley et al.(2016)
ATHB53_col_a 		0.816 0.768
ATHB-53
M06935_2.00 		Arabidopsis thaliana
NNWHCAATWATTDDN
NHHAATWATTGDWNN		 Dap-seq
OMalley et al.(2016)
ATHB53_colamp_a 		0.816 0.768
ATHB-21
M06907_2.00 		Arabidopsis thaliana
NNWHCAATWATTDN
NHAATWATTGDWNN		 Dap-seq
OMalley et al.(2016)
ATHB21_col_a 		0.815 0.821
ATHB-21
M06908_2.00 		Arabidopsis thaliana
WWDDNNNHAATWATTGDTNN
NNAHCAATWATTDNNNHHWW		 Dap-seq
OMalley et al.(2016)
ATHB21_colamp_a 		0.815 0.821
estExt_gwp_gw1.C_70211
M02220_2.00 		Physcomitrella patens
HMATNANDNN
NNHNTNATKD		 PBM
Weirauch et al.(2014)
pTH8489 		0.774 0.714
ATHB-13
M06900_2.00 		Arabidopsis thaliana
HYAATAATTDD
HHAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB13_col_a 		0.744 0.625
ATHB-13
M06901_2.00 		Arabidopsis thaliana
NYAATAATTRW
WYAATTATTRN		 Dap-seq
OMalley et al.(2016)
ATHB13_colamp_a 		0.744 0.625
ATHB-6
M02040_2.00 		Arabidopsis thaliana
HATNATTDN
NHAATNATD		 PBM
Weirauch et al.(2014)
pTH7670 		0.742 0.696
ATHB-6
M06909_2.00 		Arabidopsis thaliana
NNNHATKATTR
YAATMATDNNN		 Dap-seq
OMalley et al.(2016)
ATHB6_col_a 		0.742 0.696
ATHB-6
M06910_2.00 		Arabidopsis thaliana
NCAATAATTRN
NYAATTATTGN		 Dap-seq
OMalley et al.(2016)
ATHB6_colamp_a 		0.742 0.696
ATHB-16
M02050_2.00 		Arabidopsis thaliana
YAATMATT
AATKATTR		 PBM
Weirauch et al.(2014)
pTH7270 		0.742 0.679
HAT5
M06914_2.00 		Arabidopsis thaliana
NHAATAATTDW
WHAATTATTDN		 Dap-seq
OMalley et al.(2016)
HAT5_col_a 		0.731 0.696
HAT5
M06915_2.00 		Arabidopsis thaliana
WNYAATAATTRWDN
NHWYAATTATTRNW		 Dap-seq
OMalley et al.(2016)
HAT5_colamp_a 		0.731 0.696
HAT5
M02683_2.00 		Arabidopsis thaliana
SCAATAATTNNV
BNNAATTATTGS		 SELEX
Mathelier et al.(2014)
MA0008.2 		0.731 0.696
HAT5
M10624_2.00 		Arabidopsis thaliana
YSCAATAATTNNVN
NBNNAATTATTGSR		 Transfac
Matys et al.(2006)
P$ATHB1_01 		0.731 0.696
ATHB-5
M06932_2.00 		Arabidopsis thaliana
NYAATMATTND
HNAATKATTRN		 Dap-seq
OMalley et al.(2016)
ATHB5_col_a 		0.725 0.661
ATHB-5
M06933_2.00 		Arabidopsis thaliana
NYAATMATTN
NAATKATTRN		 Dap-seq
OMalley et al.(2016)
ATHB5_colamp_a 		0.725 0.661
ATHB-5
M02684_2.00 		Arabidopsis thaliana
CAATVATTGVVSV
BSBBCAATBATTG		 SELEX
Mathelier et al.(2014)
MA0110.2 		0.725 0.661
ATHB-5
M10630_2.00 		Arabidopsis thaliana
CAATVATTG
CAATBATTG		 Transfac
Matys et al.(2006)
P$ATHB5_01 		0.725 0.661
ATHB-22
M02041_2.00 		Arabidopsis thaliana
NNATAATWWWNNN
NNNWWWATTATNN		 PBM
Weirauch et al.(2014)
pTH5883 		0.624 0.571
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.606 0.625
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.606 0.625
ATHB-51
M00867_2.00 		Arabidopsis thaliana
ATWATKNN
NNMATWAT		 PBM
Franco-Zorrilla et al.(2014)
ATHB51 		0.599 0.589
ATHB-51
M06927_2.00 		Arabidopsis thaliana
DNCAATAATTGAD
HTCAATTATTGNH		 Dap-seq
OMalley et al.(2016)
LMI1_col_a 		0.599 0.589
ATHB-51
M06928_2.00 		Arabidopsis thaliana
NDNCAATAATTGA
TCAATTATTGNHN		 Dap-seq
OMalley et al.(2016)
LMI1_colamp_a 		0.599 0.589
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.007G051100.1 Homeodomain 48 103
Gorai.007G051100.2 Homeodomain 2 57

Links

Other Homeodomain family TFs
Other Gossypium raimondii TFs

792 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AOL_s00193g129 Arthrobotrys oligospora AOL_s00193g129 I
ARB_04706 Arthroderma benhamiae ARB_04706 I
MCYG_06105 Arthroderma otae MCYG_06105 I
COCC4DRAFT_73197 Bipolaris maydis COCC4DRAFT_73197 I
COCMIDRAFT_35701 Bipolaris oryzae COCMIDRAFT_35701 I
COCSADRAFT_175469 Bipolaris sorokiniana COCSADRAFT_175469 I
COCVIDRAFT_36324 Bipolaris victoriae COCVIDRAFT_36324 I
COCCADRAFT_6589 Bipolaris zeicola COCCADRAFT_6589 I
Bcin01g10720 Botrytis cinerea Bcin01g10720 I
A1O1_04217 Capronia coronata A1O1_04217 I
A1O3_01201 Capronia epimyces A1O3_01201 I
PV04_02426 Capronia semiimmersa PV04_02426 I
CTHT_0041740 Chaetomium thermophilum CTHT_0041740 I
Z519_11340 Cladophialophora bantiana Z519_11340 I
G647_08755 Cladophialophora carrionii G647_08755 I
PV07_02793 Cladophialophora immunda PV07_02793 I
A1O5_10463 Cladophialophora psammophila A1O5_10463 I
A1O7_02244 Cladophialophora yegresii A1O7_02244 I
CFIO01_06850 Colletotrichum fioriniae CFIO01_06850 I
CGGC5_1402 Colletotrichum gloeosporioides CGGC5_1402 I
GLRG_06548 Colletotrichum graminicola GLRG_06548 I
CH063_07689 Colletotrichum higginsianum CH063_07689 I
Cob_09205 Colletotrichum orbiculare Cob_09205 I
fgenesh1_pg.C_scaffold_9000354 Cryphonectria parasitica fgenesh1_pg.C_scaffold_9000354 I
HMPREF1541_00985 Cyphellophora europaea HMPREF1541_00985 I
H072_4417 Dactylellina haptotyla H072_4417 I
UCREL1_4517 Eutypa lata UCREL1_4517 I
A1O9_07137 Exophiala aquamarina A1O9_07137 I
HMPREF1120_08353 Exophiala dermatitidis HMPREF1120_08353 I
PV10_00855 Exophiala mesophila PV10_00855 I
PV06_04883 Exophiala oligosperma PV06_04883 I
PV11_03606 Exophiala sideris PV11_03606 I
PV08_03176 Exophiala spinifera PV08_03176 I
PV05_07246 Exophiala xenobiotica PV05_07246 I
Z517_00407 Fonsecaea pedrosoi Z517_00407 I
GGTG_07647 Gaeumannomyces graminis GGTG_07647 I
LEMA_P091860.1 Leptosphaeria maculans LEMA_P091860.1 I
MGG_07925 Magnaporthe oryzae MGG_07925 I
MCYG_06105 Microsporum canis MCYG_06105 I
MGYG_05848 Microsporum gypseum MGYG_05848 I
NCU05637 Neurospora crassa NCU05637 D
NEUTE1DRAFT_148609 Neurospora tetrasperma NEUTE1DRAFT_148609 I
OIDMADRAFT_28300 Oidiodendron maius OIDMADRAFT_28300 I
PMAA_011030 Penicillium marneffei PMAA_011030 I
SNOG_11524 Phaeosphaeria nodorum SNOG_11524 I
PODANS_4_5950 Podospora anserina PODANS_4_5950 N
GMDG_04247 Pseudogymnoascus destructans GMDG_04247 I
V499_07415 Pseudogymnoascus pannorum V499_07415 I
PTT_11477 Pyrenophora teres PTT_11477 I
Z518_04811 Rhinocladiella mackenziei Z518_04811 I
Z518_01937 Rhinocladiella mackenziei Z518_01937 I
SAPIO_CDS9377 Scedosporium apiospermum SAPIO_CDS9377 I
SBOR_0775 Sclerotinia borealis SBOR_0775 I
SETTUDRAFT_113025 Setosphaeria turcica SETTUDRAFT_113025 I
SNOG_11524 Stagonospora nodorum SNOG_11524 I
PMAA_011030 Talaromyces marneffei PMAA_011030 I
TSTA_006150 Talaromyces stipitatus TSTA_006150 I
THITE_2126380 Thielavia terrestris THITE_2126380 I
UCRPA7_1223 Togninia minima UCRPA7_1223 I
TEQG_07049 Trichophyton equinum TEQG_07049 I
H101_03147 Trichophyton interdigitale H101_03147 I
H102_02228 Trichophyton rubrum H102_02228 I
H105_02247 Trichophyton soudanense H105_02247 I
TESG_07963 Trichophyton tonsurans TESG_07963 I
TRV_07523 Trichophyton verrucosum TRV_07523 I
GSTUM_00005043001 Tuber melanosporum GSTUM_00005043001 I
PV09_00512 Verruconis gallopava PV09_00512 I
VDBG_10032 Verticillium albo atrum VDBG_10032 I
VDBG_10032 Verticillium alfalfae VDBG_10032 I