Gorai.009G049100 (Gossypium raimondii)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Gorai.009G049100 T228765_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-9
M06898_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
PHV_col_a 		0.866 0.929
ATHB-9
M02682_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 SELEX
Mathelier et al.(2014)
MA0573.1 		0.866 0.929
ATHB-9
M10623_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 Transfac
Matys et al.(2006)
P$ATHB9_01 		0.866 0.929
ATHB-15
M00864_2.00 		Arabidopsis thaliana
AATAATTACT
AGTAATTATT		 PBM
Franco-Zorrilla et al.(2014)
ICU4 		0.862 0.964
ATHB-15
M06899_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
ATHB15_col_a 		0.862 0.964
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.009G049100.1 Homeodomain 19 78
Gorai.009G049100.2 Homeodomain 19 78
Gorai.009G049100.3 Homeodomain 19 78

Links

Other Homeodomain family TFs
Other Gossypium raimondii TFs

336 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000007243 Ailuropoda melanoleuca ENSAMEG00000007243 I
ENSAPLG00000007892 Anas platyrhynchos ENSAPLG00000007892 I
ZZZ3 Anolis carolinensis ENSACAG00000006005 I
Afo_R000910 Aptenodytes forsteri Afo_R000910 I
ENSAMXG00000019065 Astyanax mexicanus ENSAMXG00000019065 I
ENSBTAP00000041453-D1 Bos grunniens ENSBTAP00000041453-D1 I
ZZZ3 Bos taurus ENSBTAG00000017419 I
fgenesh2_pg.scaffold_163000017 Branchiostoma floridae fgenesh2_pg.scaffold_163000017 I
fgenesh2_pg.scaffold_163000011 Branchiostoma floridae fgenesh2_pg.scaffold_163000011 I
Brh_R007515 Buceros rhinoceros Brh_R007515 I
ZZZ3 Callithrix jacchus ENSCJAG00000006894 I
Aan_R000828 Calypte anna Aan_R000828 I
ZZZ3 Canis familiaris ENSCAFG00000020376 I
ENSCPOG00000003135 Cavia porcellus ENSCPOG00000003135 I
Cmyd_10007243 Chelonia mydas Cmyd_10007243 I
ENSCSAG00000001398 Chlorocebus sabaeus ENSCSAG00000001398 I
ZZZ3 Choloepus hoffmanni ENSCHOG00000007997 I
zzz3 Danio rerio ENSDARG00000077581 I
ENSDNOG00000000463 Dasypus novemcinctus ENSDNOG00000000463 I
Zzz3 Dipodomys ordii ENSDORG00000010114 I
ZZZ3 Echinops telfairi ENSETEG00000013187 I
ZZZ3 Equus caballus ENSECAG00000011430 I
ZZZ3 Felis catus ENSFCAG00000001415 I
ENSFALG00000005715 Ficedula albicollis ENSFALG00000005715 I
ENSGMOG00000003250 Gadus morhua ENSGMOG00000003250 I
ZZZ3 Gallus gallus ENSGALG00000008988 I
zzz3 Gasterosteus aculeatus ENSGACG00000016546 I
Gfo_R009151 Geospiza fortis Gfo_R009151 I
ZZZ3 Gorilla gorilla ENSGGOG00000009242 I
ZZZ3 Homo sapiens ENSG00000036549 D
ENSSTOG00000016454 Ictidomys tridecemlineatus ENSSTOG00000016454 I
ENSLACG00000009877 Latimeria chalumnae ENSLACG00000009877 I
ENSLOCG00000003656 Lepisosteus oculatus ENSLOCG00000003656 I
LotgiG187172 Lottia gigantea LotgiG187172 I
ZZZ3 Loxodonta africana ENSLAFG00000011398 I
ENSP00000359837 Macaca fascicularis ENSP00000359837 I
ENSMMUG00000020219 Macaca mulatta ENSMMUG00000020219 I
ENSMEUG00000007391 Macropus eugenii ENSMEUG00000007391 I
ZZZ3 Meleagris gallopavo ENSMGAG00000009582 I
ENSMODG00000024557 Monodelphis domestica ENSMODG00000024557 I
ENSMODG00000010367 Monodelphis domestica ENSMODG00000010367 I
ENSMPUG00000010824 Mustela putorius furo ENSMPUG00000010824 I
Zzz3 Mus musculus ENSMUSG00000039068 I
Myotis_brandtii_ZZZ3_10032449 Myotis brandtii Myotis_brandtii_ZZZ3_10032449 I
ZZZ3 Myotis lucifugus ENSMLUG00000006175 I
ENSNLEG00000009672 Nomascus leucogenys ENSNLEG00000009672 I
ZZZ3 Ochotona princeps ENSOPRG00000013036 I
Ogr17321 Ophisaurus gracilis Ogr17321 I
ENSONIG00000018369 Oreochromis niloticus ENSONIG00000018369 I
ZZZ3 Ornithorhynchus anatinus ENSOANG00000015757 I
ZZZ3 Oryctolagus cuniculus ENSOCUG00000002167 I
zzz3 Oryzias latipes ENSORLG00000003342 I
ZZZ3 Otolemur garnettii ENSOGAG00000014210 I
ENSOARG00000013012 Ovis aries ENSOARG00000013012 I
ZZZ3 Pan troglodytes ENSPTRG00000000881 I
ENSPANG00000005101 Papio anubis ENSPANG00000005101 I
ENSPSIG00000011052 Pelodiscus sinensis ENSPSIG00000011052 I
ENSPFOG00000000834 Poecilia formosa ENSPFOG00000000834 I
Pvit_10393 Pogona vitticeps Pvit_10393 I
ENSPPYG00000001223 Pongo abelii ENSPPYG00000001223 I
ZZZ3 Procavia capensis ENSPCAG00000016692 I
ZZZ3 Pteropus vampyrus ENSPVAG00000017539 I
Zzz3 Rattus norvegicus ENSRNOG00000050321 I
Sakowv30043886m.g Saccoglossus kowalevskii Sakowv30043886m.g I
ENSSHAG00000002082 Sarcophilus harrisii ENSSHAG00000002082 I
ZZZ3 Sorex araneus ENSSARG00000004268 I
ZZZ3 Sus scrofa ENSSSCG00000003772 I
ZZZ3 Taeniopygia guttata ENSTGUG00000007000 I
zzz3 Takifugu rubripes ENSTRUG00000006240 I
ENSTNIG00000006386 Tetraodon nigroviridis ENSTNIG00000006386 I
Tal_R004642 Tyto alba Tal_R004642 I
ZZZ3 Vicugna pacos ENSVPAG00000001421 I
zzz3 Xenopus tropicalis XB-GENE-993548 I
XP_002939691 Xenopus tropicalis XP_002939691 I
ENSXMAG00000016350 Xiphophorus maculatus ENSXMAG00000016350 I