Pavir.Ea03389 (Panicum virgatum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Pavir.Ea03389 T229248_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.781 0.698
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.664 0.488
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.664 0.488
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.664 0.488
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.664 0.488
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.626 0.628
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ea03389.1.p Homeodomain 358 403

Links

Other Homeodomain family TFs
Other Panicum virgatum TFs

1020 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACRE_056110 Acremonium chrysogenum ACRE_056110 I 0.000
AB07784.1 Alternaria brassicicola AB07784.1 I 0.000
AOL_s00173g128 Arthrobotrys oligospora AOL_s00173g128 N 0.000
ARB_03655 Arthroderma benhamiae ARB_03655 I 0.000
MCYG_01486 Arthroderma otae MCYG_01486 I 0.000
fgenesh1_pm.00083_#_572 Aspergillus carbonarius fgenesh1_pm.00083_#_572 I 0.000
ACLA_023830 Aspergillus clavatus CADACLAG00002657 I 0.000
CADAFLAG00008215 Aspergillus flavus CADAFLAG00008215 I 0.000
AFUA_1G11800 Aspergillus fumigatus CADAFUAG00007601 I 0.000
ANIA_01114 Aspergillus nidulans CADANIAG00001514 I 0.000
CADANGAG00006720 Aspergillus niger CADANGAG00006720 I 0.000
EURHEDRAFT_515289 Aspergillus ruber EURHEDRAFT_515289 I 0.000
ATEG_00373 Aspergillus terreus CADATEAG00007187 I 0.000
M437DRAFT_59197 Aureobasidium melanogenum M437DRAFT_59197 I 0.000
M438DRAFT_398194 Aureobasidium pullulans M438DRAFT_398194 I 0.000
AUEXF2481DRAFT_33171 Aureobasidium subglaciale AUEXF2481DRAFT_33171 I 0.000
BAUCODRAFT_190174 Baudoinia compniacensis BAUCODRAFT_190174 I 0.000
BBA_02099 Beauveria bassiana BBA_02099 I 0.000
COCC4DRAFT_128615 Bipolaris maydis COCC4DRAFT_128615 I 0.000
COCMIDRAFT_34913 Bipolaris oryzae COCMIDRAFT_34913 I 0.000
COCSADRAFT_163131 Bipolaris sorokiniana COCSADRAFT_163131 I 0.000
COCVIDRAFT_25662 Bipolaris victoriae COCVIDRAFT_25662 I 0.000
COCCADRAFT_8201 Bipolaris zeicola COCCADRAFT_8201 I 0.000
BDDG_01232 Blastomyces dermatitidis BDDG_01232 I 0.000
Bcin11g02290 Botrytis cinerea Bcin11g02290 I 0.000
PVAR5_3751 Byssochlamys spectabilis PVAR5_3751 I 0.000
A1O1_06375 Capronia coronata A1O1_06375 I 0.000
A1O3_09996 Capronia epimyces A1O3_09996 I 0.000
PV04_06397 Capronia semiimmersa PV04_06397 I 0.000
CHGG_00821 Chaetomium globosum CHGG_00821 I 0.000
Z519_03752 Cladophialophora bantiana Z519_03752 I 0.000
G647_06523 Cladophialophora carrionii G647_06523 I 0.000
PV07_03516 Cladophialophora immunda PV07_03516 I 0.000
A1O5_08901 Cladophialophora psammophila A1O5_08901 I 0.000
A1O7_06013 Cladophialophora yegresii A1O7_06013 I 0.000
CIMG_07010 Coccidioides immitis CIMG_07010 I 0.000
CPC735_033720 Coccidioides posadasii CPC735_033720 I 0.000
estExt_fgenesh1_pg.C_60292 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_60292 I 0.000
CFIO01_08807 Colletotrichum fioriniae CFIO01_08807 I 0.000
GLRG_03970 Colletotrichum graminicola GLRG_03970 I 0.000
CH063_12530 Colletotrichum higginsianum CH063_12530 I 0.000
Cob_01636 Colletotrichum orbiculare Cob_01636 I 0.000
CSUB01_01372 Colletotrichum sublineola CSUB01_01372 I 0.000
W97_00561 Coniosporium apollinis W97_00561 I 0.000
CCM_06899 Cordyceps militaris CCM_06899 I 0.000
estExt_fgenesh1_pg.C_50693 Cryphonectria parasitica estExt_fgenesh1_pg.C_50693 I 0.000
HMPREF1541_01524 Cyphellophora europaea HMPREF1541_01524 I 0.000
H072_10339 Dactylellina haptotyla H072_10339 N 0.000
DOTSEDRAFT_68329 Dothistroma septosporum DOTSEDRAFT_68329 I 0.000
DRE_00265 Drechslerella stenobrocha DRE_00265 I 0.000
UCREL1_11189 Eutypa lata UCREL1_11189 I 0.000
A1O9_07978 Exophiala aquamarina A1O9_07978 I 0.000
HMPREF1120_03828 Exophiala dermatitidis HMPREF1120_03828 I 0.000
PV10_08190 Exophiala mesophila PV10_08190 I 0.000
PV06_02480 Exophiala oligosperma PV06_02480 I 0.000
PV11_07448 Exophiala sideris PV11_07448 I 0.000
PV08_02622 Exophiala spinifera PV08_02622 I 0.000
PV05_08455 Exophiala xenobiotica PV05_08455 I 0.000
Z517_01173 Fonsecaea pedrosoi Z517_01173 I 0.000
FFUJ_01329 Fusarium fujikuroi FFUJ_01329 I 0.000
FGRRES_01139 Fusarium graminearum FGRRES_01139 I 0.000
FOXG_00250 Fusarium oxysporum FOXG_00250 I 0.000
FPSE_01025 Fusarium pseudograminearum FPSE_01025 I 0.000
NechaG74625 Fusarium solani NechaG74625 I 0.000
FVEG_01266 Fusarium verticillioides FVEG_01266 I 0.000
GGTG_10163 Gaeumannomyces graminis GGTG_10163 I 0.000
CMQ_8079 Grosmannia clavigera CMQ_8079 I 0.000
LEMA_P051770.1 Leptosphaeria maculans LEMA_P051770.1 I 0.000
MPH_03506 Macrophomina phaseolina MPH_03506 I 0.000
MGG_00190 Magnaporthe oryzae MGG_00190 I 0.000
MBM_05753 Marssonina brunnea MBM_05753 I 0.000
MAC_05305 Metarhizium acridum MAC_05305 I 0.000
MAM_06778 Metarhizium album MAM_06778 I 0.000
MAJ_02265 Metarhizium majus MAJ_02265 I 0.000
X797_003719 Metarhizium robertsii X797_003719 I 0.000
MCYG_01486 Microsporum canis MCYG_01486 I 0.000
MGYG_04584 Microsporum gypseum MGYG_04584 I 0.000
MYCTH_2136960 Myceliophthora thermophila MYCTH_2136960 I 0.000
estExt_Genewise1Plus.C_12488 Mycosphaerella fijiensis estExt_Genewise1Plus.C_12488 I 0.000
estExt_fgenesh1_pg.C_chr_11274 Mycosphaerella graminicola estExt_fgenesh1_pg.C_chr_11274 I 0.000
fgenesh1_pg.sca_1_chr1_3_0000236 Nectria haematococca fgenesh1_pg.sca_1_chr1_3_0000236 I 0.000
NFIA_013750 Neosartorya fischeri CADNFIAG00000692 I 0.000
NCU03077 Neurospora crassa NCU03077 D 0.000
NEUTE1DRAFT_91395 Neurospora tetrasperma NEUTE1DRAFT_91395 I 0.000
OIDMADRAFT_120781 Oidiodendron maius OIDMADRAFT_120781 I 0.000
OCS_06751 Ophiocordyceps sinensis OCS_06751 I 0.000
F503_02328 Ophiostoma piceae uamh F503_02328 I 0.000
PABG_00408 Paracoccidioides brasiliensis PABG_00408 I 0.000
PAAG_07715 Paracoccidioides sp lutzii PAAG_07715 I 0.000
Pc13g11100 Penicillium chrysogenum Pc13g11100 I 0.000
PDIP_28360 Penicillium digitatum PDIP_28360 I 0.000
PEX1_036250 Penicillium expansum PEX1_036250 I 0.000
PITC_060100 Penicillium italicum PITC_060100 I 0.000
PMAA_043170 Penicillium marneffei PMAA_043170 I 0.000
PDE_00349 Penicillium oxalicum PDE_00349 I 0.000
PCH_Pc13g11100 Penicillium rubens PCH_Pc13g11100 I 0.000
U727_00434280111 Penicillium solitum U727_00434280111 I 0.000
PFICI_01479 Pestalotiopsis fici PFICI_01479 I 0.000
SNOG_06810 Phaeosphaeria nodorum SNOG_06810 I 0.000
PODANS_1_11860 Podospora anserina PODANS_1_11860 I 0.000
GMDG_03925 Pseudogymnoascus destructans GMDG_03925 I 0.000
V499_06127 Pseudogymnoascus pannorum V499_06127 I 0.000
PTT_17167 Pyrenophora teres PTT_17167 I 0.000
Z518_05389 Rhinocladiella mackenziei Z518_05389 I 0.000
SAPIO_CDS3083 Scedosporium apiospermum SAPIO_CDS3083 I 0.000
SBOR_4877 Sclerotinia borealis SBOR_4877 I 0.000
SS1G_01557 Sclerotinia sclerotiorum SS1G_01557 I 0.000
SETTUDRAFT_156846 Setosphaeria turcica SETTUDRAFT_156846 I 0.000
SMAC_02806 Sordaria macrospora SMAC_02806 I 0.000
SEPMUDRAFT_129980 Sphaerulina musiva SEPMUDRAFT_129980 I 0.000
SPBR_04826 Sporothrix brasiliensis SPBR_04826 I 0.000
HMPREF1624_05225 Sporothrix schenckii HMPREF1624_05225 I 0.000
S40288_03500 Stachybotrys chartarum S40288_03500 I 0.000
S40285_00857 Stachybotrys chlorohalonata S40285_00857 I 0.000
SNOG_06810 Stagonospora nodorum SNOG_06810 I 0.000
PMAA_043170 Talaromyces marneffei PMAA_043170 I 0.000
TSTA_076950 Talaromyces stipitatus TSTA_076950 I 0.000
THITE_2143564 Thielavia terrestris THITE_2143564 I 0.000
VHEMI06472 Torrubiella hemipterigena VHEMI06472 I 0.000
TRIATDRAFT_198898 Trichoderma atroviride TRIATDRAFT_198898 I 0.000
TRIREDRAFT_112532 Trichoderma reesei TRIREDRAFT_112532 I 0.000
TRIVIDRAFT_142610 Trichoderma virens TRIVIDRAFT_142610 I 0.000
TEQG_07596 Trichophyton equinum TEQG_07596 I 0.000
H101_05541 Trichophyton interdigitale H101_05541 I 0.000
H102_00883 Trichophyton rubrum H102_00883 I 0.000
H105_00889 Trichophyton soudanense H105_00889 I 0.000
TRV_02590 Trichophyton verrucosum TRV_02590 I 0.000
GSTUM_00009268001 Tuber melanosporum GSTUM_00009268001 I 0.000
UREG_05851 Uncinocarpus reesii UREG_05851 I 0.000
UV8b_5026 Ustilaginoidea virens UV8b_5026 I 0.000
PV09_02511 Verruconis gallopava PV09_02511 I 0.000
VDAG_03217 Verticillium dahliae VDAG_03217 I 0.000
Mycgr3G107535 Zymoseptoria tritici Mycgr3G107535 I 0.000