Pavir.Ia00979 (Panicum virgatum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Pavir.Ia00979 T229291_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.781 0.667
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.664 0.452
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.664 0.452
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.664 0.452
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.664 0.452
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.614 0.548
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ia00979.1.p Homeodomain 285 328
Pavir.Ia00979.2.p Homeodomain 285 328

Links

Other Homeodomain family TFs
Other Panicum virgatum TFs

1020 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000017202 Ailuropoda melanoleuca ENSAMEG00000017202 N 0.000
ENSAPLG00000002277 Anas platyrhynchos ENSAPLG00000002277 N 0.000
Afo_R001817 Aptenodytes forsteri Afo_R001817 N 0.000
ENSP00000299237-D1 Bos grunniens ENSP00000299237-D1 N 0.000
ZNF319 Bos taurus ENSBTAG00000045572 N 0.000
ZNF319 Callithrix jacchus ENSCJAG00000022826 N 0.000
Aan_R013485 Calypte anna Aan_R013485 N 0.000
ZNF319 Canis familiaris ENSCAFG00000008559 N 0.000
Cmyd_10003977 Chelonia mydas Cmyd_10003977 N 0.000
ENSCSAG00000018864 Chlorocebus sabaeus ENSCSAG00000018864 N 0.000
ENSDORG00000001887 Dipodomys ordii ENSDORG00000001887 N 0.000
ZNF319 Felis catus ENSFCAG00000024689 N 0.000
ENSFALG00000014292 Ficedula albicollis ENSFALG00000014292 N 0.000
ZNF319 Gallus gallus ENSGALG00000000999 N 0.000
Gfo_R016059 Geospiza fortis Gfo_R016059 N 0.000
ZNF319 Gorilla gorilla ENSGGOG00000017145 N 0.000
ZNF319 Homo sapiens ENSG00000166188 N 0.000
ENSSTOG00000019944 Ictidomys tridecemlineatus ENSSTOG00000019944 N 0.000
ZNF319 Loxodonta africana ENSLAFG00000002266 N 0.000
ENSP00000299237 Macaca fascicularis ENSP00000299237 N 0.000
ZNF319 Macaca mulatta ENSMMUG00000022668 N 0.000
ZNF319 Microcebus murinus ENSMICG00000004897 N 0.000
ENSMPUG00000004675 Mustela putorius furo ENSMPUG00000004675 N 0.000
Zfp319 Mus musculus ENSMUSG00000046556 N 0.000
ENSNLEG00000003339 Nomascus leucogenys ENSNLEG00000003339 N 0.000
ZNF319 Otolemur garnettii ENSOGAG00000003269 N 0.000
ENSOARG00000001098 Ovis aries ENSOARG00000001098 N 0.000
ENSPANG00000015991 Papio anubis ENSPANG00000015991 N 0.000
ENSPSIG00000004303 Pelodiscus sinensis ENSPSIG00000004303 N 0.000
Pvit_06816 Pogona vitticeps Pvit_06816 N 0.000
ZNF319 Pteropus vampyrus ENSPVAG00000004612 N 0.000
Zfp319 Rattus norvegicus ENSRNOG00000013460 N 0.000
ZNF319 Taeniopygia guttata ENSTGUG00000004796 N 0.000
ZNF319 Tursiops truncatus ENSTTRG00000008426 N 0.000
Tal_R002390 Tyto alba Tal_R002390 N 0.000