SapurV1A.0950s0040 (Salix purpurea)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 SapurV1A.0950s0040 T229497_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-15
M00864_2.00 		Arabidopsis thaliana
AATAATTACT
AGTAATTATT		 PBM
Franco-Zorrilla et al.(2014)
ICU4 		0.865 0.946
ATHB-15
M06899_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
ATHB15_col_a 		0.865 0.946
ATHB-9
M06898_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
PHV_col_a 		0.859 0.875
ATHB-9
M02682_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 SELEX
Mathelier et al.(2014)
MA0573.1 		0.859 0.875
ATHB-9
M10623_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 Transfac
Matys et al.(2006)
P$ATHB9_01 		0.859 0.875
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SapurV1A.0950s0040.1.p Homeodomain 20 79
SapurV1A.0950s0040.2.p Homeodomain 20 79

Links

Other Homeodomain family TFs
Other Salix purpurea TFs

336 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ciclev10026033m.g Citrus clementina Ciclev10026033m.g N
orange1.1g037355m.g Citrus sinensis orange1.1g037355m.g N
gene05559-v1.0-hybrid Fragaria vesca gene05559-v1.0-hybrid N
cassava20168.m1 Manihot esculenta cassava20168.m1 N
cassava44568.m1 Manihot esculenta cassava44568.m1 N
Solyc01g068540.2 Solanum lycopersicum Solyc01g068540.2 N
PGSC0003DMG400000839 Solanum tuberosum PGSC0003DMG400000839 N
VIT_17s0000g03540 Vitis vinifera VIT_17s0000g03540 N