AAG42360 (Xenopus laevis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 AAG42360 T229644_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Six4
M00461_2.00 		Mus musculus
NNKABMHNN
NNDKVTMNN		 PBM
Berger et al.(2008)
Six4_2860 		0.669 0.913
SIX4
M04939_2.00 		Homo sapiens
NVYGATACVB
VBGTATCRBN		 SELEX
Yin et al.(2017)
SIX4_eDBD_HT-SELEX 		0.669 0.913
Six4
M09198_2.00 		Mus musculus
DGDAABHNSASNNN
NNNSTSNDVTTHCH		 Misc
Kulakovskiy et al.(2013)
SIX4_MOUSE.H11MO.0.C 		0.669 0.913
SIX4
M10646_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX4_Q3 		0.669 0.913
SIX4
M04940_2.00 		Homo sapiens
NBGTAWCRHN
NDYGWTACVN		 SELEX
Yin et al.(2017)
SIX4_eDBD_Methyl-HT-SELEX 		0.669 0.913
Six4
M00563_2.00 		Drosophila melanogaster
NNDANMHNN
NNDKNTHNN		 PBM
Busser et al.(2012a)
Six4 		0.668 0.761
Six4
M06530_2.00 		Drosophila melanogaster
TGABAC
GTVTCA		 B1H
Mathelier et al.(2014)
MA0204.1 		0.668 0.761
Six4
M06334_2.00 		Drosophila melanogaster
WDDTGABAC
GTVTCAHHW		 B1H
Zhu et al.(2011)
Six4_Cell_FBgn0027364 		0.668 0.761
Six4
M06335_2.00 		Drosophila melanogaster
NTGAKACB
VGTMTCAN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_2_FBgn0027364 		0.668 0.761
Six4
M06336_2.00 		Drosophila melanogaster
NNNTGABA
TVTCANNN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_FBgn0027364 		0.668 0.761
SIX5
M08208_2.00 		Homo sapiens
GARWTGTAGT
ACTACAWYTC		 ChIP-seq
Contrino et al.(2012)
Mv121 		0.667 0.739
SIX5
M08209_2.00 		Homo sapiens
GGAGTTGT
ACAACTCC		 ChIP-seq
Contrino et al.(2012)
Mv123 		0.667 0.739
SIX5
M10738_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_01 		0.667 0.739
SIX5
M10739_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_02 		0.667 0.739
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAG42360 Homeodomain 118 163

Links

Other Homeodomain family TFs
Other Xenopus laevis TFs

207 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000008949 Ailuropoda melanoleuca ENSAMEG00000008949 N
Alligator_sinensis_CCG004871.1 Alligator sinensis Alligator_sinensis_CCG004871.1 N
ENSAPLG00000007652 Anas platyrhynchos ENSAPLG00000007652 N
GB51085 Apis mellifera GB51085 N
ENSAMXG00000008885 Astyanax mexicanus ENSAMXG00000008885 N
ACEP23774 Atta cephalotes ACEP23774 N
ENSP00000352819-D1 Bos grunniens ENSP00000352819-D1 N
PRDM13 Bos taurus ENSBTAG00000006095 N
gw.79.7.1 Branchiostoma floridae gw.79.7.1 N
PRDM13 Callithrix jacchus ENSCJAG00000001421 N
Cflo_06083--XP_001122320.1_APIME Camponotus floridanus Cflo_06083--XP_001122320.1_APIME N
PRDM13 Canis familiaris ENSCAFG00000023314 N
Cmyd_10002903 Chelonia mydas Cmyd_10002903 N
ENSCSAG00000014622 Chlorocebus sabaeus ENSCSAG00000014622 N
PRDM13 Choloepus hoffmanni ENSCHOG00000011613 N
CGI_10026455 Crassostrea gigas CGI_10026455 N
prdm13 Danio rerio ENSDARG00000078701 N
DAPPUDRAFT_111472 Daphnia pulex DAPPUDRAFT_111472 N
PRDM13 Dasypus novemcinctus ENSDNOG00000006520 N
YQE_11778 Dendroctonus ponderosae YQE_11778 N
ENSDORG00000003558 Dipodomys ordii ENSDORG00000003558 N
PRDM13 Echinops telfairi ENSETEG00000004709 N
PRDM13 Felis catus ENSFCAG00000010288 N
ENSGMOG00000006125 Gadus morhua ENSGMOG00000006125 N
prdm13 Gasterosteus aculeatus ENSGACG00000005032 N
PRDM13 Gorilla gorilla ENSGGOG00000006947 N
PRDM13 Homo sapiens ENSG00000112238 N
ENSSTOG00000016567 Ictidomys tridecemlineatus ENSSTOG00000016567 N
ENSLACG00000008814 Latimeria chalumnae ENSLACG00000008814 N
ENSLOCG00000017084 Lepisosteus oculatus ENSLOCG00000017084 N
LotgiG130257 Lottia gigantea LotgiG130257 N
PRDM13 Loxodonta africana ENSLAFG00000012439 N
ENSP00000352819 Macaca fascicularis ENSP00000352819 N
ENSMICG00000001097 Microcebus murinus ENSMICG00000001097 N
PRDM13 Monodelphis domestica ENSMODG00000018089 N
ENSMPUG00000001648 Mustela putorius furo ENSMPUG00000001648 N
Prdm13 Mus musculus ENSMUSG00000040478 N
PRDM13 Myotis lucifugus ENSMLUG00000001899 N
ENSNLEG00000013845 Nomascus leucogenys ENSNLEG00000013845 N
Ocbimv22009191m.g Octopus bimaculoides Ocbimv22009191m.g N
ENSONIG00000000112 Oreochromis niloticus ENSONIG00000000112 N
PRDM13 Oryctolagus cuniculus ENSOCUG00000003216 N
prdm13 Oryzias latipes ENSORLG00000002129 N
PRDM13 Otolemur garnettii ENSOGAG00000031927 N
ENSOARG00000011775 Ovis aries ENSOARG00000011775 N
PRDM13 Pan troglodytes ENSPTRG00000018445 N
ENSPANG00000017638 Papio anubis ENSPANG00000017638 N
PHUM605290 Pediculus humanus PHUM605290 N
ENSPSIG00000002567 Pelodiscus sinensis ENSPSIG00000002567 N
ENSPFOG00000019371 Poecilia formosa ENSPFOG00000019371 N
ENSPPYG00000016866 Pongo abelii ENSPPYG00000016866 N
PRDM13 Pteropus vampyrus ENSPVAG00000001695 N
Prdm13 Rattus norvegicus ENSRNOG00000007683 N
RPRC014451 Rhodnius prolixus RPRC014451 N
ENSSHAG00000013340 Sarcophilus harrisii ENSSHAG00000013340 N
SMU15022318 Schmidtea mediterranea SMU15022318 N
SINV25212 Solenopsis invicta SINV25212 N
SMAR008272 Strigamia maritima SMAR008272 N
SMAR010327 Strigamia maritima SMAR010327 N
PRDM13 Sus scrofa ENSSSCG00000004354 N
prdm13 Takifugu rubripes ENSTRUG00000000334 N
prdm13 Tetraodon nigroviridis ENSTNIG00000006867 N
TC014373 Tribolium castaneum TC014373 N
PRDM13 Tursiops truncatus ENSTTRG00000004705 N
prdm13 Xenopus tropicalis XB-GENE-960155 N
ENSXMAG00000002547 Xiphophorus maculatus ENSXMAG00000002547 N
L798_05013 Zootermopsis nevadensis L798_05013 N