CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

PK17424.1 *(Cannabis sativa)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00046 (Homeobox)	IPR001356	PK17424.1	T230107_2.00	Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ATHB-13 M06900_2.00	Arabidopsis thaliana	HYAATAATTDD	HHAATTATTRD	Dap-seq OMalley et al.(2016) ATHB13_col_a	0.814	0.750
ATHB-13 M06901_2.00	Arabidopsis thaliana	NYAATAATTRW	WYAATTATTRN	Dap-seq OMalley et al.(2016) ATHB13_colamp_a	0.814	0.750
estExt_gwp_gw1.C_70211 M02220_2.00	Physcomitrella patens	HMATNANDNN	NNHNTNATKD	PBM Weirauch et al.(2014) pTH8489	0.807	0.804
ATHB-5 M06932_2.00	Arabidopsis thaliana	NYAATMATTND	HNAATKATTRN	Dap-seq OMalley et al.(2016) ATHB5_col_a	0.794	0.821
ATHB-5 M06933_2.00	Arabidopsis thaliana	NYAATMATTN	NAATKATTRN	Dap-seq OMalley et al.(2016) ATHB5_colamp_a	0.794	0.821
ATHB-5 M02684_2.00	Arabidopsis thaliana	CAATVATTGVVSV	BSBBCAATBATTG	SELEX Mathelier et al.(2014) MA0110.2	0.794	0.821
ATHB-5 M10630_2.00	Arabidopsis thaliana	CAATVATTG	CAATBATTG	Transfac Matys et al.(2006) P$ATHB5_01	0.794	0.821
ATHB-6 M02040_2.00	Arabidopsis thaliana	HATNATTDN	NHAATNATD	PBM Weirauch et al.(2014) pTH7670	0.776	0.857
ATHB-6 M06909_2.00	Arabidopsis thaliana	NNNHATKATTR	YAATMATDNNN	Dap-seq OMalley et al.(2016) ATHB6_col_a	0.776	0.857
ATHB-6 M06910_2.00	Arabidopsis thaliana	NCAATAATTRN	NYAATTATTGN	Dap-seq OMalley et al.(2016) ATHB6_colamp_a	0.776	0.857
ATHB-16 M02050_2.00	Arabidopsis thaliana	YAATMATT	AATKATTR	PBM Weirauch et al.(2014) pTH7270	0.776	0.821
HAT5 M06914_2.00	Arabidopsis thaliana	NHAATAATTDW	WHAATTATTDN	Dap-seq OMalley et al.(2016) HAT5_col_a	0.763	0.750
HAT5 M06915_2.00	Arabidopsis thaliana	WNYAATAATTRWDN	NHWYAATTATTRNW	Dap-seq OMalley et al.(2016) HAT5_colamp_a	0.763	0.750
HAT5 M02683_2.00	Arabidopsis thaliana	SCAATAATTNNV	BNNAATTATTGS	SELEX Mathelier et al.(2014) MA0008.2	0.763	0.750
HAT5 M10624_2.00	Arabidopsis thaliana	YSCAATAATTNNVN	NBNNAATTATTGSR	Transfac Matys et al.(2006) P$ATHB1_01	0.763	0.750
ATHB-21 M06907_2.00	Arabidopsis thaliana	NNWHCAATWATTDN	NHAATWATTGDWNN	Dap-seq OMalley et al.(2016) ATHB21_col_a	0.749	0.661
ATHB-21 M06908_2.00	Arabidopsis thaliana	WWDDNNNHAATWATTGDTNN	NNAHCAATWATTDNNNHHWW	Dap-seq OMalley et al.(2016) ATHB21_colamp_a	0.749	0.661
HB-5 M06924_2.00	Arabidopsis thaliana	NNAHCAATWATTKDNNNHWWH	DWWDNNNHMAATWATTGDTNN	Dap-seq OMalley et al.(2016) ATHB40_col_a	0.748	0.643
HB-5 M06925_2.00	Arabidopsis thaliana	HHAATWATTGDWNN	NNWHCAATWATTDD	Dap-seq OMalley et al.(2016) ATHB40_colamp_a	0.748	0.643
ATHB-53 M06934_2.00	Arabidopsis thaliana	HMAATAATTRD	HYAATTATTKD	Dap-seq OMalley et al.(2016) ATHB53_col_a	0.743	0.625
ATHB-53 M06935_2.00	Arabidopsis thaliana	NNWHCAATWATTDDN	NHHAATWATTGDWNN	Dap-seq OMalley et al.(2016) ATHB53_colamp_a	0.743	0.625
PK20392.1 M01250_2.00	Cannabis sativa	NHAATMATDN	NHATKATTDN	PBM Lambert et al.(2019) pTH11331	0.680	0.768
PK20392.1 M01251_2.00	Cannabis sativa	NHAATMATDN	NHATKATTDN	PBM Lambert et al.(2019) pTH11332	0.680	0.768
ATHB-20 M06912_2.00	Arabidopsis thaliana	HYAATAATTRD	HYAATTATTRD	Dap-seq OMalley et al.(2016) ATHB20_col_a	0.655	0.732
ATHB-20 M06913_2.00	Arabidopsis thaliana	HYAATMATTRD	HYAATKATTRD	Dap-seq OMalley et al.(2016) ATHB20_colamp_a	0.655	0.732
ATHB-7 M02043_2.00	Arabidopsis thaliana	NHWTGATTGN	NCAATCAWDN	PBM Weirauch et al.(2014) pTH8090	0.613	0.643
ATHB-7 M06911_2.00	Arabidopsis thaliana	NHYCAATCATTSW	WSAATGATTGRDN	Dap-seq OMalley et al.(2016) ATHB7_col_a	0.613	0.643
For this family, TFs with SR scores > 0.599* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
PK17424.1	Homeodomain	59	114	GKKRRLSSNQVKALERYFEMENKLEPERKSKLADELGLQPRQVAIWFQNRRARWKT

Links
Other Homeodomain family TFs
Other *Cannabis sativa* TFs

818 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
MCYG_04601	Arthroderma otae	MCYG_04601	N	0.000
e_gw1.00168.159.1	Aspergillus carbonarius	e_gw1.00168.159.1	N	0.000
ACLA_057380	Aspergillus clavatus	CADACLAG00005479	N	0.000
CADAFLAG00013320	Aspergillus flavus	CADAFLAG00013320	N	0.000
AFUA_8G04050	Aspergillus fumigatus	CADAFUAG00003174	N	0.000
ANIA_01414	Aspergillus nidulans	CADANIAG00008025	N	0.000
CADANGAG00013376	Aspergillus niger	CADANGAG00013376	N	0.000
CADAORAG00009949	Aspergillus oryzae	CADAORAG00009949	N	0.000
ATEG_00017	Aspergillus terreus	CADATEAG00006845	N	0.000
BAUCODRAFT_151124	Baudoinia compniacensis	BAUCODRAFT_151124	N	0.000
COCMIDRAFT_1020	Bipolaris oryzae	COCMIDRAFT_1020	N	0.000
COCSADRAFT_236058	Bipolaris sorokiniana	COCSADRAFT_236058	N	0.000
COCVIDRAFT_89258	Bipolaris victoriae	COCVIDRAFT_89258	N	0.000
COCCADRAFT_86582	Bipolaris zeicola	COCCADRAFT_86582	N	0.000
BDDG_01560	Blastomyces dermatitidis	BDDG_01560	N	0.000
PVAR5_2342	Byssochlamys spectabilis	PVAR5_2342	N	0.000
PV04_10035	Capronia semiimmersa	PV04_10035	N	0.000
Z519_12336	Cladophialophora bantiana	Z519_12336	N	0.000
G647_09336	Cladophialophora carrionii	G647_09336	N	0.000
PV07_08929	Cladophialophora immunda	PV07_08929	N	0.000
A1O5_12074	Cladophialophora psammophila	A1O5_12074	N	0.000
CIMG_04403	Coccidioides immitis	CIMG_04403	N	0.000
CPC735_073390	Coccidioides posadasii	CPC735_073390	N	0.000
estExt_Genewise1.C_50962	Cochliobolus heterostrophus C5	estExt_Genewise1.C_50962	N	0.000
W97_03914	Coniosporium apollinis	W97_03914	N	0.000
DOTSEDRAFT_73764	Dothistroma septosporum	DOTSEDRAFT_73764	N	0.000
PV06_06886	Exophiala oligosperma	PV06_06886	N	0.000
PV08_07435	Exophiala spinifera	PV08_07435	N	0.000
PV05_03864	Exophiala xenobiotica	PV05_03864	N	0.000
Z517_09513	Fonsecaea pedrosoi	Z517_09513	N	0.000
HCBG_07066	Histoplasma capsulatum	HCBG_07066	N	0.000
LEMA_P074270.1	Leptosphaeria maculans	LEMA_P074270.1	N	0.000
MPH_02576	Macrophomina phaseolina	MPH_02576	N	0.000
MCYG_04601	Microsporum canis	MCYG_04601	N	0.000
estExt_fgenesh1_pg.C_180114	Mycosphaerella fijiensis	estExt_fgenesh1_pg.C_180114	N	0.000
fgenesh1_pm.C_chr_2000302	Mycosphaerella graminicola	fgenesh1_pm.C_chr_2000302	N	0.000
UCRNP2_5776	Neofusicoccum parvum	UCRNP2_5776	N	0.000
NFIA_096760	Neosartorya fischeri	CADNFIAG00008980	N	0.000
PABG_02006	Paracoccidioides brasiliensis	PABG_02006	N	0.000
Pc22g10070	Penicillium chrysogenum	Pc22g10070	N	0.000
PDIP_88910	Penicillium digitatum	PDIP_88910	N	0.000
PEX1_097650	Penicillium expansum	PEX1_097650	N	0.000
PITC_007200	Penicillium italicum	PITC_007200	N	0.000
PMAA_086780	Penicillium marneffei	PMAA_086780	N	0.000
PDE_00973	Penicillium oxalicum	PDE_00973	N	0.000
PCH_Pc22g10070	Penicillium rubens	PCH_Pc22g10070	N	0.000
SNOG_02548	Phaeosphaeria nodorum	SNOG_02548	N	0.000
MYCFIDRAFT_217053	Pseudocercospora fijiensis	MYCFIDRAFT_217053	N	0.000
PTT_14589	Pyrenophora teres	PTT_14589	N	0.000
PTRG_08153	Pyrenophora triticirepentis	PTRG_08153	N	0.000
SETTUDRAFT_34428	Setosphaeria turcica	SETTUDRAFT_34428	N	0.000
SEPMUDRAFT_88495	Sphaerulina musiva	SEPMUDRAFT_88495	N	0.000
SNOG_02548	Stagonospora nodorum	SNOG_02548	N	0.000
PMAA_086780	Talaromyces marneffei	PMAA_086780	N	0.000
PV09_00999	Verruconis gallopava	PV09_00999	N	0.000
Mycgr3G84654	Zymoseptoria tritici	Mycgr3G84654	N	0.000

PK17424.1 (Cannabis sativa) Homeodomain

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

818 Related TFs

PK17424.1 **(Cannabis sativa)
Homeodomain**