PK21144.1 (Cannabis sativa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 PK21144.1 T230118_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.780 0.694
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.636 0.592
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.611 0.449
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.611 0.449
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.611 0.449
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.611 0.449
KNAT3
M02051_2.00 		Arabidopsis thaliana
NNNGACVBNN
NNVBGTCNNN		 PBM
Weirauch et al.(2014)
pTH7600 		0.601 0.449
KNAT4
M01238_2.00 		Arabidopsis thaliana
NNGACNNNN
NNNNGTCNN		 PBM
Lambert et al.(2019)
pTH9968 		0.601 0.429
KNAT7
M01064_2.00 		Arabidopsis thaliana
TGACRKST
ASMYGTCA		 PBM
Sullivan et al.(2014)
pTH9798 		0.600 0.408
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PK21144.1 Homeodomain 407 458

Links

Other Homeodomain family TFs
Other Cannabis sativa TFs

1213 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
M378DRAFT_213370 Amanita muscaria M378DRAFT_213370 I
CERSUDRAFT_79927 Ceriporiopsis subvermispora CERSUDRAFT_79927 I
CC1G_13761 Coprinopsis cinerea CC1G_13761 I
FIBRA_04875 Fibroporia radiculosa FIBRA_04875 I
FOMPIDRAFT_1133812 Fomitopsis pinicola FOMPIDRAFT_1133812 I
GLOTRDRAFT_30797 Gloeophyllum trabeum GLOTRDRAFT_30797 I
fgenesh2_pg.C_scaffold_1000086 Heterobasidion annosum fgenesh2_pg.C_scaffold_1000086 I
JAAARDRAFT_112445 Jaapia argillacea JAAARDRAFT_112445 I
K443DRAFT_132577 Laccaria amethystina K443DRAFT_132577 I
LACBIDRAFT_301563 Laccaria bicolor LACBIDRAFT_301563 I
PAXINDRAFT_86770 Paxillus involutus PAXINDRAFT_86770 I
PAXRUDRAFT_128990 Paxillus rubicundulus PAXRUDRAFT_128990 I
PISMIDRAFT_58693 Pisolithus microcarpus PISMIDRAFT_58693 I
M404DRAFT_57116 Pisolithus tinctorius M404DRAFT_57116 I
POSPLDRAFT_106184 Postia placenta POSPLDRAFT_106184 I
SCHCODRAFT_258883 Schizophyllum commune SCHCODRAFT_258883 D
SCLCIDRAFT_1207253 Scleroderma citrinum SCLCIDRAFT_1207253 I
SERLA73DRAFT_115823 Serpula lacrymans SERLA73DRAFT_115823 I
CY34DRAFT_41572 Suillus luteus CY34DRAFT_41572 I
BN946_scf184576.g4 Trametes cinnabarina BN946_scf184576.g4 I