SMU15037290 (Schmidtea mediterranea)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 SMU15037290 T230307_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SIX6
M00325_2.00 		Homo sapiens
NNNDATMB
VKATHNNN		 PBM
Barrera et al.(2016)
SIX6_H141N 		0.862 0.930
SIX6
M00326_2.00 		Homo sapiens
NNDATMB
VKATHNN		 PBM
Barrera et al.(2016)
SIX6_REF 		0.861 0.912
Six6
M00169_2.00 		Mus musculus
NNAYMNN
NNKRTNN		 PBM
Badis et al.(2009)
Six6_2267 		0.861 0.912
Six6
M00412_2.00 		Mus musculus
NNNTGATAYCN
NGRTATCANNN		 PBM
Berger et al.(2008)
Six6_2267 		0.861 0.912
Six3
M00483_2.00 		Mus musculus
NNNAYMN
NKRTNNN		 PBM
Berger et al.(2008)
Six3_1732 		0.861 0.912
SIX3
M05159_2.00 		Homo sapiens
NNYGATABBN
NVVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX 		0.861 0.912
SIX6
M05357_2.00 		Homo sapiens
NNYGATASVB
VBSTATCRNN		 SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX 		0.861 0.912
SIX3
M10698_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX3_Q6 		0.861 0.912
SIX3
M05160_2.00 		Homo sapiens
NNYGATABVB
VBVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX 		0.861 0.912
SIX6
M05358_2.00 		Homo sapiens
VBVYAYCRNN
NNYGRTRBVB		 SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX 		0.861 0.912
six3
M02102_2.00 		Oryzias latipes
NNDAYMBNNN
NNNVKRTHNN		 PBM
Weirauch et al.(2014)
pTH5928 		0.861 0.895
Optix
M02124_2.00 		Drosophila melanogaster
NNNNNDATMN
NKATHNNNNN		 PBM
Weirauch et al.(2014)
pTH5437 		0.861 0.877
Optix
M03850_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
Optix_1 		0.861 0.877
Optix
M06526_2.00 		Drosophila melanogaster
TGATA
TATCA		 B1H
Mathelier et al.(2014)
MA0199.1 		0.861 0.877
Optix
M06327_2.00 		Drosophila melanogaster
HHVTGATA
TATCABDD		 B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360 		0.861 0.877
Optix
M06328_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360 		0.861 0.877
SIX6
M00327_2.00 		Homo sapiens
NHDAYMBNN
NNVKRTHDN		 PBM
Barrera et al.(2016)
SIX6_T165A 		0.855 0.895
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SMU15037290 Homeodomain 158 214

Links

Other Homeodomain family TFs
Other Schmidtea mediterranea TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
nAv.1.0.1.g09844 Acanthocheilonema viteae nAv.1.0.1.g09844 N
ANCCAN_07014 Ancylostoma caninum ANCCAN_07014 N
ANCCEY_01108 Ancylostoma ceylanicum ANCCEY_01108 N
ANCDUO_25554 Ancylostoma duodenale ANCDUO_25554 N
ALUE_0001723701 Ascaris lumbricoides ALUE_0001723701 I
Bm11328 Brugia malayi Bm11328 I
BTMF_0001641801 Brugia timori BTMF_0001641801 N
CGOC_0001182201 Cylicostephanus goldi CGOC_0001182201 N
ENSDORG00000004435 Dipodomys ordii ENSDORG00000004435 I
HHAL001589-PA Halyomorpha halys HHAL001589-PA I
nLs.2.1.2.g09869 Litomosoides sigmodontis nLs.2.1.2.g09869 N
NECAME_14111 Necator americanus NECAME_14111 N
OFLC_0000413701 Onchocerca flexuosa OFLC_0000413701 I
nOo.2.0.1.g04457 Onchocerca ochengi nOo.2.0.1.g04457 N
SMAR013465 Strigamia maritima SMAR013465 I
SMAR011013 Strigamia maritima SMAR011013 I
EFV53558 Trichinella spiralis EFV53558 I