XP_002937921 (Xenopus tropicalis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 XP_002937921 T230746_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Pbx3
M09205_2.00 		Mus musculus
BBBTGATTGRYNDN
NHNRYCAATCAVVV		 Misc
Kulakovskiy et al.(2013)
PBX3_MOUSE.H11MO.0.A 		0.867 1.000
Pbx1
M00513_2.00 		Mus musculus
NNDKANNNN
NNNNTMHNN		 PBM
Berger et al.(2008)
Pbx1_3203 		0.865 0.965
PBX1
M05362_2.00 		Homo sapiens
NTGATKGAYR
YRTCMATCAN		 SELEX
Yin et al.(2017)
PBX1_eDBD_HT-SELEX 		0.865 0.965
PBX1
M05364_2.00 		Homo sapiens
DTGMTKGRYN
NRYCMAKCAH		 SELEX
Yin et al.(2017)
PBX1_FL_HT-SELEX 		0.865 0.965
PBX1
M02685_2.00 		Homo sapiens
WWTGATTGATND
HNATCAATCAWW		 SELEX
Mathelier et al.(2014)
MA0070.1 		0.865 0.965
PBX2
M08134_2.00 		Homo sapiens
NWGAKTGACABN
NVTGTCAMTCWN		 ChIP-seq
Mathelier et al.(2014)
MA1113.1 		0.865 0.965
PBX1
M09164_2.00 		Homo sapiens
DGABTGRCRG
CYGYCAVTCH		 Misc
Kulakovskiy et al.(2013)
PBX1_HUMAN.H11MO.0.A 		0.865 0.965
PBX2
M09165_2.00 		Homo sapiens
KRVHKTGATTGAWKN
NMWTCAATCAMDBYM		 Misc
Kulakovskiy et al.(2013)
PBX2_HUMAN.H11MO.0.C 		0.865 0.965
Pbx2
M09199_2.00 		Mus musculus
KRVHKTGATTGAWKN
NMWTCAATCAMDBYM		 Misc
Kulakovskiy et al.(2013)
PBX2_MOUSE.H11MO.0.C 		0.865 0.965
PBX1
M09561_2.00 		Homo sapiens
TGABTGACAGSC
GSCTGTCAVTCA		 Misc
Heinz et al.(2010)
MCF7-PBX1_GSE28007 		0.865 0.965
PBX1
M10748_2.00 		Homo sapiens
WTKATTRDT
AHYAATMAW		 Transfac
Matys et al.(2006)
V$PBX1_01 		0.865 0.965
PBX1
M10749_2.00 		Homo sapiens
DNHTTGATTGATKDB
VHMATCAATCAADNH		 Transfac
Matys et al.(2006)
V$PBX1_02 		0.865 0.965
PBX1
M10750_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_03 		0.865 0.965
PBX1
M10751_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_05 		0.865 0.965
PBX1
M10752_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_10 		0.865 0.965
PBX1
M10753_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_Q3 		0.865 0.965
PBX1
M05363_2.00 		Homo sapiens
DTGAKKGAYG
CRTCMMTCAH		 SELEX
Yin et al.(2017)
PBX1_eDBD_Methyl-HT-SELEX 		0.865 0.965
PBX1
M05365_2.00 		Homo sapiens
MRTCAATCMH
DKGATTGAYK		 SELEX
Yin et al.(2017)
PBX1_FL_Methyl-HT-SELEX 		0.865 0.965
pbx4
M02110_2.00 		Tetraodon nigroviridis
TTGAYGDV
BHCRTCAA		 PBM
Weirauch et al.(2014)
pTH6425 		0.865 0.947
exd
M06487_2.00 		Drosophila melanogaster
YRTCAAAN
NTTTGAYR		 B1H
Mathelier et al.(2014)
MA0222.1 		0.820 0.947
exd
M06243_2.00 		Drosophila melanogaster
YRTCAAAN
NTTTGAYR		 B1H
Zhu et al.(2011)
Exd_Cell_FBgn0000611 		0.820 0.947
exd
M06244_2.00 		Drosophila melanogaster
NWRNWYNAAA
TTTNRWNYWN		 B1H
Zhu et al.(2011)
exd_FlyReg_FBgn0000611 		0.820 0.947
exd
M06245_2.00 		Drosophila melanogaster
NDTGAYRW
WYRTCAHN		 B1H
Zhu et al.(2011)
exd_SOLEXA_2_FBgn0000611 		0.820 0.947
exd
M06246_2.00 		Drosophila melanogaster
NNDTGAYR
YRTCAHNN		 B1H
Zhu et al.(2011)
Exd_SOLEXA_FBgn0000611 		0.820 0.947
PBX4
M00277_2.00 		Homo sapiens
NNDDWHDNNN
NNNHDWHHNN		 PBM
Barrera et al.(2016)
PBX4_REF 		0.813 0.877
PBX4
M10649_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX4_01 		0.813 0.877
CBG10835
M01243_2.00 		Caenorhabditis briggsae
NNTKAYDNN
NNHRTMANN		 PBM
Lambert et al.(2019)
pTH11444 		0.691 0.579
PBX4
M00276_2.00 		Homo sapiens
NYTAATTADNN
NNHTAATTARN		 PBM
Barrera et al.(2016)
PBX4_R215Q 		0.675 0.860
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
XP_002937921 Homeodomain 236 295

Links

Other Homeodomain family TFs
Other Xenopus tropicalis TFs

436 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000005011 Ailuropoda melanoleuca ENSAMEG00000005011 N
ENSBTAP00000010078-D1 Bos grunniens ENSBTAP00000010078-D1 N
ZNF414 Bos taurus ENSBTAG00000007660 N
ZNF414 Canis familiaris ENSCAFG00000018529 N
ENSCPOG00000027253 Cavia porcellus ENSCPOG00000027253 N
ENSCSAG00000007968 Chlorocebus sabaeus ENSCSAG00000007968 N
ZNF414 Echinops telfairi ENSETEG00000019716 N
ZNF414 Equus caballus ENSECAG00000023401 N
ZNF414 Felis catus ENSFCAG00000015220 N
ZNF414 Gorilla gorilla ENSGGOG00000003514 N
ZNF414 Homo sapiens ENSG00000133250 N
ENSSTOG00000028879 Ictidomys tridecemlineatus ENSSTOG00000028879 N
ZNF414 Loxodonta africana ENSLAFG00000021907 N
ENSP00000377504 Macaca fascicularis ENSP00000377504 N
ZNF414 Macaca mulatta ENSMMUG00000019918 N
ENSMPUG00000007231 Mustela putorius furo ENSMPUG00000007231 N
Zfp414 Mus musculus ENSMUSG00000073423 N
Myotis_brandtii_ZNF414_10012537 Myotis brandtii Myotis_brandtii_ZNF414_10012537 N
ZNF414 Myotis lucifugus ENSMLUG00000006742 N
ENSNLEG00000001897 Nomascus leucogenys ENSNLEG00000001897 N
ZNF414 Oryctolagus cuniculus ENSOCUG00000027412 N
ZNF414 Otolemur garnettii ENSOGAG00000003243 N
ENSOARG00000004095 Ovis aries ENSOARG00000004095 N
ZNF414 Pan troglodytes ENSPTRG00000010427 N
ENSPANG00000000284 Papio anubis ENSPANG00000000284 N
ENSPPYG00000009508 Pongo abelii ENSPPYG00000009508 N
ZNF414 Pteropus vampyrus ENSPVAG00000009654 N
Zfp414 Rattus norvegicus ENSRNOG00000008378 N
ZNF414 Tupaia belangeri ENSTBEG00000004008 N
ZNF414 Tursiops truncatus ENSTTRG00000009785 N