chr2.CM0826.10.nc (Lotus japonicus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 chr2.CM0826.10.nc T230810_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
KNAT7
M01064_2.00 		Arabidopsis thaliana
TGACRKST
ASMYGTCA		 PBM
Sullivan et al.(2014)
pTH9798 		0.752 0.612
KNAT4
M01238_2.00 		Arabidopsis thaliana
NNGACNNNN
NNNNGTCNN		 PBM
Lambert et al.(2019)
pTH9968 		0.752 0.592
KNAT3
M02051_2.00 		Arabidopsis thaliana
NNNGACVBNN
NNVBGTCNNN		 PBM
Weirauch et al.(2014)
pTH7600 		0.752 0.592
HOS66
M02156_2.00 		Oryza sativa
NNNNDHNN
NNDHNNNN		 PBM
Weirauch et al.(2014)
pTH8332 		0.739 0.612
PK25034.1
M01254_2.00 		Cannabis sativa
NNTGACRKBN
NVMYGTCANN		 PBM
Lambert et al.(2019)
pTH11259 		0.694 0.837
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.667 0.469
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.642 0.469
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.642 0.469
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.642 0.469
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.642 0.469
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.607 0.408
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr2.CM0826.10.nc Homeodomain 235 286

Links

Other Homeodomain family TFs
Other Lotus japonicus TFs

1243 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000003238 Ailuropoda melanoleuca ENSAMEG00000003238 N 0.000
ENSAPLG00000010735 Anas platyrhynchos ENSAPLG00000010735 N 0.000
NFXL1 Bos taurus ENSBTAG00000002201 N 0.000
NFXL1 Callithrix jacchus ENSCJAG00000018893 N 0.000
Aan_R004132 Calypte anna Aan_R004132 N 0.000
NFXL1 Canis familiaris ENSCAFG00000001913 N 0.000
NFXL1 Cavia porcellus ENSCPOG00000014371 N 0.000
ENSCSAG00000017157 Chlorocebus sabaeus ENSCSAG00000017157 N 0.000
NFXL1 Equus caballus ENSECAG00000022401 N 0.000
NFXL1 Felis catus ENSFCAG00000031403 N 0.000
ENSGMOG00000016659 Gadus morhua ENSGMOG00000016659 N 0.000
NFXL1 Gallus gallus ENSGALG00000014138 N 0.000
nfxl1 Gasterosteus aculeatus ENSGACG00000000304 N 0.000
NFXL1 Gorilla gorilla ENSGGOG00000008489 N 0.000
NFXL1 Homo sapiens ENSG00000170448 N 0.000
NFXL1 Loxodonta africana ENSLAFG00000014027 N 0.000
ENSP00000370949 Macaca fascicularis ENSP00000370949 N 0.000
NFXL1 Monodelphis domestica ENSMODG00000020621 N 0.000
Nfxl1 Mus musculus ENSMUSG00000072889 N 0.000
Myotis_brandtii_NFXL1_10022858 Myotis brandtii Myotis_brandtii_NFXL1_10022858 N 0.000
NFXL1 Myotis lucifugus ENSMLUG00000008367 N 0.000
ENSNLEG00000017372 Nomascus leucogenys ENSNLEG00000017372 N 0.000
ENSOANG00000012970 Ornithorhynchus anatinus ENSOANG00000012970 N 0.000
NFXL1 Oryctolagus cuniculus ENSOCUG00000008876 N 0.000
NFXL1 Otolemur garnettii ENSOGAG00000006702 N 0.000
ENSOARG00000016535 Ovis aries ENSOARG00000016535 N 0.000
NFXL1 Pan troglodytes ENSPTRG00000016035 N 0.000
ENSPSIG00000010167 Pelodiscus sinensis ENSPSIG00000010167 N 0.000
ENSPMAG00000002716 Petromyzon marinus ENSPMAG00000002716 N 0.000
ENSPPYG00000014711 Pongo abelii ENSPPYG00000014711 N 0.000
ENSSHAG00000002875 Sarcophilus harrisii ENSSHAG00000002875 N 0.000
NFXL1 Sorex araneus ENSSARG00000006641 N 0.000
NFXL1 Sus scrofa ENSSSCG00000008816 N 0.000
NFXL1 Taeniopygia guttata ENSTGUG00000008171 N 0.000
NFXL1 Tursiops truncatus ENSTTRG00000003273 N 0.000