ALUE_0001616301 (Ascaris lumbricoides)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 ALUE_0001616301 T232854_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Six4
M00461_2.00 		Mus musculus
NNKABMHNN
NNDKVTMNN		 PBM
Berger et al.(2008)
Six4_2860 		0.772 0.528
SIX4
M04939_2.00 		Homo sapiens
NVYGATACVB
VBGTATCRBN		 SELEX
Yin et al.(2017)
SIX4_eDBD_HT-SELEX 		0.772 0.528
Six4
M09198_2.00 		Mus musculus
DGDAABHNSASNNN
NNNSTSNDVTTHCH		 Misc
Kulakovskiy et al.(2013)
SIX4_MOUSE.H11MO.0.C 		0.772 0.528
SIX4
M10646_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX4_Q3 		0.772 0.528
SIX4
M04940_2.00 		Homo sapiens
NBGTAWCRHN
NDYGWTACVN		 SELEX
Yin et al.(2017)
SIX4_eDBD_Methyl-HT-SELEX 		0.772 0.528
Six4
M00563_2.00 		Drosophila melanogaster
NNDANMHNN
NNDKNTHNN		 PBM
Busser et al.(2012a)
Six4 		0.759 0.528
Six4
M06530_2.00 		Drosophila melanogaster
TGABAC
GTVTCA		 B1H
Mathelier et al.(2014)
MA0204.1 		0.759 0.528
Six4
M06334_2.00 		Drosophila melanogaster
WDDTGABAC
GTVTCAHHW		 B1H
Zhu et al.(2011)
Six4_Cell_FBgn0027364 		0.759 0.528
Six4
M06335_2.00 		Drosophila melanogaster
NTGAKACB
VGTMTCAN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_2_FBgn0027364 		0.759 0.528
Six4
M06336_2.00 		Drosophila melanogaster
NNNTGABA
TVTCANNN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_FBgn0027364 		0.759 0.528
SIX5
M08208_2.00 		Homo sapiens
GARWTGTAGT
ACTACAWYTC		 ChIP-seq
Contrino et al.(2012)
Mv121 		0.759 0.509
SIX5
M08209_2.00 		Homo sapiens
GGAGTTGT
ACAACTCC		 ChIP-seq
Contrino et al.(2012)
Mv123 		0.759 0.509
SIX5
M10738_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_01 		0.759 0.509
SIX5
M10739_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_02 		0.759 0.509
Six2
M00425_2.00 		Mus musculus
NNAYMYNN
NNRKRTNN		 PBM
Berger et al.(2008)
Six2_2307 		0.666 0.547
Six1
M00512_2.00 		Mus musculus
NNDATMYNNN
NNNRKATHNN		 PBM
Berger et al.(2008)
Six1_0935 		0.666 0.547
SIX1
M05094_2.00 		Homo sapiens
NNYGATACVB
VBGTATCRNN		 SELEX
Yin et al.(2017)
SIX1_eDBD_HT-SELEX 		0.666 0.547
SIX1
M05096_2.00 		Homo sapiens
NNYGATAYVB
VBRTATCRNN		 SELEX
Yin et al.(2017)
SIX1_FL_HT-SELEX 		0.666 0.547
SIX2
M05285_2.00 		Homo sapiens
NNYGATACSB
VSGTATCRNN		 SELEX
Yin et al.(2017)
SIX2_eDBD_HT-SELEX 		0.666 0.547
SIX2
M05287_2.00 		Homo sapiens
NSGTRWCRYN
NRYGWYACSN		 SELEX
Yin et al.(2017)
SIX2_FL_HT-SELEX 		0.666 0.547
SIX1
M08130_2.00 		Homo sapiens
GWAACCTGANM
KNTCAGGTTWC		 ChIP-seq
Mathelier et al.(2014)
MA1118.1 		0.666 0.547
SIX2
M08133_2.00 		Homo sapiens
NNNTGWAACCTGAKMH
DKMTCAGGTTWCANNN		 ChIP-seq
Mathelier et al.(2014)
MA1119.1 		0.666 0.547
SIX1
M09142_2.00 		Homo sapiens
DGWAAYHTGABMYN
NRKVTCADRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX1_HUMAN.H11MO.0.A 		0.666 0.547
SIX2
M09157_2.00 		Homo sapiens
DGWAAYHHGABMH
DKVTCDDRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX2_HUMAN.H11MO.0.A 		0.666 0.547
Six2
M09185_2.00 		Mus musculus
DGWAAYHYRABMYB
VRKVTYRDRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX2_MOUSE.H11MO.0.A 		0.666 0.547
Six1
M09579_2.00 		Mus musculus
GWAAYHTGABMH
DKVTCADRTTWC		 Misc
Heinz et al.(2010)
Myoblast-Six1_GSE20150 		0.666 0.547
SIX1
M10684_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX1_Q3_01 		0.666 0.547
SIX1
M10685_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX1_Q3 		0.666 0.547
SIX1
M05095_2.00 		Homo sapiens
NNYGATABNB
VNVTATCRNN		 SELEX
Yin et al.(2017)
SIX1_eDBD_Methyl-HT-SELEX 		0.666 0.547
SIX1
M05097_2.00 		Homo sapiens
NNYGATAYSB
VSRTATCRNN		 SELEX
Yin et al.(2017)
SIX1_FL_Methyl-HT-SELEX 		0.666 0.547
SIX2
M05286_2.00 		Homo sapiens
NBRTATCRNN
NNYGATAYVN		 SELEX
Yin et al.(2017)
SIX2_eDBD_Methyl-HT-SELEX 		0.666 0.547
SIX2
M05288_2.00 		Homo sapiens
VBRTAWCRNN
NNYGWTAYVB		 SELEX
Yin et al.(2017)
SIX2_FL_Methyl-HT-SELEX 		0.666 0.547
so
M02117_2.00 		Drosophila melanogaster
NDATMYNNN
NNNRKATHN		 PBM
Weirauch et al.(2014)
pTH5690 		0.666 0.528
so
M03800_2.00 		Drosophila melanogaster
NYGATAYB
VRTATCRN		 SELEX
Nitta et al.(2015)
so_1 		0.666 0.528
so
M03801_2.00 		Drosophila melanogaster
YKATAYNNNYGATAY
RTATCRNNNRTATMR		 SELEX
Nitta et al.(2015)
so_2 		0.666 0.528
so
M03802_2.00 		Drosophila melanogaster
YGATACGTATCR
YGATACGTATCR		 SELEX
Nitta et al.(2015)
so_3 		0.666 0.528
so
M03803_2.00 		Drosophila melanogaster
RTATCRYGATAC
GTATCRYGATAY		 SELEX
Nitta et al.(2015)
so_4 		0.666 0.528
so
M06497_2.00 		Drosophila melanogaster
TGATAC
GTATCA		 B1H
Mathelier et al.(2014)
MA0246.1 		0.666 0.528
so
M06268_2.00 		Drosophila melanogaster
NRTGATA
TATCAYN		 B1H
Zhu et al.(2011)
So_Cell_FBgn0003460 		0.666 0.528
so
M06269_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
So_SOLEXA_FBgn0003460 		0.666 0.528
ceh-34
M00672_2.00 		Caenorhabditis elegans
NNNRDAWNNN
NNNWTHYNNN		 PBM
Narasimhan et al.(2015)
pTH9708 		0.625 0.547
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ALUE_0001616301-mRNA-1 Homeodomain 169 221

Links

Other Homeodomain family TFs
Other Ascaris lumbricoides TFs

544 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACYPI001448 Acyrthosiphon pisum ACYPI001448 I
AALB010655 Anopheles albimanus AALB010655 I
AARA000771 Anopheles arabiensis AARA000771 I
ACHR006076 Anopheles christyi ACHR006076 I
ACUA022223 Anopheles culicifacies ACUA022223 I
ADIR004364 Anopheles dirus ADIR004364 I
AEPI000695 Anopheles epiroticus AEPI000695 I
AFUN009694 Anopheles funestus AFUN009694 I
AMEM016167 Anopheles merus AMEM016167 I
AMIN004405 Anopheles minimus AMIN004405 I
AQUA008654 Anopheles quadriannulatus AQUA008654 I
GB40416 Apis mellifera GB40416 I
ENSAMXG00000024993 Astyanax mexicanus ENSAMXG00000024993 I
ENSAMXG00000025610 Astyanax mexicanus ENSAMXG00000025610 I
ACEP23430 Atta cephalotes ACEP23430 I
Cflo_04586--NP_001011637.1_APIME Camponotus floridanus Cflo_04586--NP_001011637.1_APIME I
CapteG154829 Capitella teleta CapteG154829 I
csin110283 Clonorchis sinensis csin110283 I
CGI_10013641 Crassostrea gigas CGI_10013641 I
CGI_10006631 Crassostrea gigas CGI_10006631 I
CpipJ_CPIJ012828 Culex pipiens CpipJ_CPIJ012828 I
CpipJ_CPIJ012827 Culex pipiens CpipJ_CPIJ012827 I
CPIJ012827 Culex quinquefasciatus CPIJ012827 I
CPIJ012828 Culex quinquefasciatus CPIJ012828 I
twist1a Danio rerio ENSDARG00000030402 I
twist1b Danio rerio ENSDARG00000076010 I
twist2 Danio rerio ENSDARG00000078266 I
DILT_0001206901 Diphyllobothrium latum DILT_0001206901 I
GF13559 Drosophila ananassae FBgn0090588 I
twi Drosophila erecta FBgn0064598 I
GH20971 Drosophila grimshawi FBgn0128433 I
twi Drosophila melanogaster FBgn0003900 D
GI21307 Drosophila mojavensis FBgn0144037 I
GL11229 Drosophila persimilis FBgn0148838 I
twi Drosophila pseudoobscura FBgn0243556 I
GM15978 Drosophila sechellia FBgn0170894 I
twi Drosophila simulans FBgn0016355 I
twi Drosophila virilis FBgn0020065 I
GK19547 Drosophila willistoni FBgn0221545 I
twi Drosophila yakuba FBgn0084444 I
ECANG7_02703 Echinococcus canadensis ECANG7_02703 I
EmuJ_000663800 Echinococcus multilocularis EmuJ_000663800 I
ECPE_0000551801 Echinostoma caproni ECPE_0000551801 I
D915_00417 Fasciola hepatica D915_00417 I
ENSFALG00000015081 Ficedula albicollis ENSFALG00000015081 I
twist2 Gasterosteus aculeatus ENSGACG00000002227 I
TWIST1 Gasterosteus aculeatus ENSGACG00000006420 I
Gfo_R014393 Geospiza fortis Gfo_R014393 I
Hsal_01530--NP_001011637.1_APIME Harpegnathos saltator Hsal_01530--NP_001011637.1_APIME I
TTAC_0000855201 Hydatigera taeniaeformis TTAC_0000855201 I
HDID_0001003601 Hymenolepis diminuta HDID_0001003601 I
HmN_000912800 Hymenolepis microstoma HmN_000912800 I
HNAJ_0000179601 Hymenolepis nana HNAJ_0000179601 I
ISCW009433 Ixodes scapularis ISCW009433 I
LCUP006189 Lucilia cuprina LCUP006189 I
MCOS_0000111401 Mesocestoides corti MCOS_0000111401 I
MDOA005417 Musca domestica MDOA005417 I
NV10141 Nasonia vitripennis NV10141 I
ENSONIG00000020610 Oreochromis niloticus ENSONIG00000020610 I
ENSONIG00000021342 Oreochromis niloticus ENSONIG00000021342 I
ENSONIG00000020502 Oreochromis niloticus ENSONIG00000020502 I
twist1 Oryzias latipes ENSORLG00000007251 I
twist2 Oryzias latipes ENSORLG00000018096 I
ENSPMAG00000003993 Petromyzon marinus ENSPMAG00000003993 I
PPAI007734 Phlebotomus papatasi PPAI007734 N
ENSPFOG00000020314 Poecilia formosa ENSPFOG00000020314 I
ENSPFOG00000020053 Poecilia formosa ENSPFOG00000020053 I
ENSPFOG00000019887 Poecilia formosa ENSPFOG00000019887 I
Sakowv30001350m.g Saccoglossus kowalevskii Sakowv30001350m.g I
SSLN_0000059301 Schistocephalus solidus SSLN_0000059301 I
SCUD_0002255501 Schistosoma curassoni SCUD_0002255501 I
A_07561 Schistosoma haematobium A_07561 I
Sjc_0042560 Schistosoma japonicum Sjc_0042560 I
Smp_203270 Schistosoma mansoni Smp_203270 I
SMU15037660 Schmidtea mediterranea SMU15037660 I
SPU_030059 Strongylocentrotus purpuratus SPU_030059 I
TASK_0000180901 Taenia asiatica TASK_0000180901 I
TsM_000716700 Taenia solium TsM_000716700 I
ENSTGUG00000003756 Taeniopygia guttata ENSTGUG00000003756 I
twist1 Takifugu rubripes ENSTRUG00000015797 I
twist2 Takifugu rubripes ENSTRUG00000006090 I
twist1b Tetraodon nigroviridis ENSTNIG00000018440 I
TWIST1 Tetraodon nigroviridis ENSTNIG00000001678 I
twist2 Tetraodon nigroviridis ENSTNIG00000001562 I
D917_00468 Trichinella nativa D917_00468 I
EFV58362 Trichinella spiralis EFV58362 I
TRE_0001282801 Trichobilharzia regenti TRE_0001282801 I
TMUE_s0004013100 Trichuris muris TMUE_s0004013100 I
D918_07072 Trichuris suis D918_07072 I
TTRE_0000397101 Trichuris trichiura TTRE_0000397101 I
twist1.S Xenopus laevis XB-GENE-865309 I
twist1.L Xenopus laevis XB-GENE-6255840 I
twist1 Xenopus tropicalis XB-GENE-479802 I
ENSXMAG00000019787 Xiphophorus maculatus ENSXMAG00000019787 I
ENSXMAG00000020062 Xiphophorus maculatus ENSXMAG00000020062 I
ENSXMAG00000020142 Xiphophorus maculatus ENSXMAG00000020142 I