CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

csin101526 *(Clonorchis sinensis)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00046 (Homeobox)	IPR001356	csin101526	T233344_2.00	WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Nkx2-3 M00497_2.00	Mus musculus	NNRAGDRNN	NNYHCTYNN	PBM Berger et al.(2008) Nkx2-3_3435	0.610	0.789
NKX2-3 M05042_2.00	Homo sapiens	NNBAAGTGBN	NVCACTTVNN	SELEX Yin et al.(2017) NKX2-3_eDBD_HT-SELEX	0.610	0.789
NKX2-3 M05045_2.00	Homo sapiens	BNBAAGTGBN	NVCACTTVNV	SELEX Yin et al.(2017) NKX2-3_FL_HT-SELEX	0.610	0.789
NKX2-3 M05043_2.00	Homo sapiens	BNBAAGTGBN	NVCACTTVNV	SELEX Yin et al.(2017) NKX2-3_eDBD_Methyl-HT-SELEX_1	0.610	0.789
NKX2-3 M05044_2.00	Homo sapiens	SDYAACGHB	VDCGTTRHS	SELEX Yin et al.(2017) NKX2-3_eDBD_Methyl-HT-SELEX_2	0.610	0.789
NKX2-3 M05046_2.00	Homo sapiens	BNBAAGTGBN	NVCACTTVNV	SELEX Yin et al.(2017) NKX2-3_FL_Methyl-HT-SELEX_1	0.610	0.789
NKX2-3 M05047_2.00	Homo sapiens	SWYAACSHB	VDSGTTRWS	SELEX Yin et al.(2017) NKX2-3_FL_Methyl-HT-SELEX_2	0.610	0.789
NKX2-5 M00323_2.00	Homo sapiens	NWYAAGTGSNN	NNSCACTTRWN	PBM Barrera et al.(2016) NKX2-5_REF	0.609	0.737
Nkx2-5 M00404_2.00	Mus musculus	NNNRAGDRBN	NVYHCTYNNN	PBM Berger et al.(2008) Nkx2-5_3436	0.609	0.737
NKX2-5 M05346_2.00	Homo sapiens	BHYAAGTGBN	NVCACTTRDV	SELEX Yin et al.(2017) NKX2-5_FL_HT-SELEX	0.609	0.737
Nkx2-5 M02686_2.00	Mus musculus	WTAAKWK	MWMTTAW	SELEX Mathelier et al.(2014) MA0063.1	0.609	0.737
Nkx2-5 M08136_2.00	Mus musculus	SYTGAGWGSYH	DRSCWCTCARS	ChIP-seq Mathelier et al.(2014) MA0503.1	0.609	0.737
NKX2-5 M09163_2.00	Homo sapiens	BKRAGWGV	BCWCTYMV	Misc Kulakovskiy et al.(2013) NKX25_HUMAN.H11MO.0.B	0.609	0.737
Nkx2-5 M09177_2.00	Mus musculus	NBYBRAGTGS	SCACTYVRVN	Misc Kulakovskiy et al.(2013) NKX25_MOUSE.H11MO.0.A	0.609	0.737
Nkx2-5 M09567_2.00	Mus musculus	HBRAGWGBNN	NNVCWCTYVD	Misc Heinz et al.(2010) HL1-Nkx2.5.biotin_GSE21529	0.609	0.737
NKX2-5 M10742_2.00	Homo sapiens	TYAAGTG	CACTTRA	Transfac Matys et al.(2006) V$NKX25_01	0.609	0.737
NKX2-5 M10743_2.00	Homo sapiens	CWTAATTV	BAATTAWG	Transfac Matys et al.(2006) V$NKX25_02	0.609	0.737
NKX2-5 M10744_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$NKX25_Q5	0.609	0.737
NKX2-5 M10745_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$NKX25_Q6	0.609	0.737
NKX2-5 M00324_2.00	Homo sapiens	NHNNNNN	NNNNNDN	PBM Barrera et al.(2016) NKX2-5_T178M	0.609	0.737
NKX2-5 M05347_2.00	Homo sapiens	BTYAAGTGGN	NCCACTTRAV	SELEX Yin et al.(2017) NKX2-5_FL_Methyl-HT-SELEX_1	0.609	0.737
NKX2-5 M05348_2.00	Homo sapiens	BTYAACGAB	VTCGTTRAV	SELEX Yin et al.(2017) NKX2-5_FL_Methyl-HT-SELEX_2	0.609	0.737
NKX2-5 M00322_2.00	Homo sapiens	NNNRNNN	NNNYNNN	PBM Barrera et al.(2016) NKX2-5_R190C	0.609	0.719
ceh-28 M08210_2.00	Caenorhabditis elegans	AATCGATW	WATCGATT	ChIP-seq Contrino et al.(2012) Mw138	0.607	0.667
Nkx2-9 M00520_2.00	Mus musculus	NNNRAGDRBN	NVYHCTYNNN	PBM Berger et al.(2008) Nkx2-9_3082	0.604	0.684
Nkx2-9 M00800_2.00	Mus musculus	NNRAGDRBNN	NNVYHCTYNN	PBM Weirauch et al.(2013) pTH2842	0.604	0.684
Nkx2-9 M09215_2.00	Mus musculus	BTCAAGKRB	VYMCTTGAV	Misc Kulakovskiy et al.(2013) NKX28_MOUSE.H11MO.0.C	0.604	0.684
NKX2-5 M00321_2.00	Homo sapiens	HNAAGTRBNN	NNVYACTTND	PBM Barrera et al.(2016) NKX2-5_R161P	0.604	0.719
scro M03854_2.00	Drosophila melanogaster	NNBRMGTGB	VCACKYVNN	SELEX Nitta et al.(2015) scro_1	0.603	0.702
For this family, TFs with SR scores > 0.599* will likely have a similar motif*