D917_09254 (Trichinella nativa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 D917_09254 T233515_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.747 0.391
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.747 0.391
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.747 0.391
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.747 0.391
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.747 0.391
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.747 0.391
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.747 0.391
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.747 0.391
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.747 0.391
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.658 0.217
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.658 0.217
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.658 0.217
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
D917_09254 Homeodomain 235 280

Links

Other Homeodomain family TFs
Other Trichinella nativa TFs

1218 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AOL_s00076g275 Arthrobotrys oligospora AOL_s00076g275 I 0.000
CAOG_07434 Capsaspora owczarzaki CAOG_07434 N 0.000
Cmyd_10005683 Chelonia mydas Cmyd_10005683 I 0.000
H072_2579 Dactylellina haptotyla H072_2579 I 0.000
DRE_02367 Drechslerella stenobrocha DRE_02367 I 0.000
PV10_05533 Exophiala mesophila PV10_05533 N 0.000
MCOS_0001020701 Mesocestoides corti MCOS_0001020701 N 0.000
ENSPSIG00000017578 Pelodiscus sinensis ENSPSIG00000017578 I 0.000
JL09_g2006 Pichia kudriavzevii JL09_g2006 N 0.000
TSTA_121740 Talaromyces stipitatus TSTA_121740 I 0.000
M407DRAFT_44130 Tulasnella calospora M407DRAFT_44130 N 0.000