GPLIN_001075500 (Globodera pallida)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 GPLIN_001075500 T234057_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.675 0.391
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.675 0.391
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.675 0.391
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.675 0.391
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.675 0.391
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.675 0.391
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.675 0.391
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.675 0.391
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.675 0.391
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.625 0.261
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.625 0.261
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.625 0.261
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GPLIN_001075500 Homeodomain 39 84

Links

Other Homeodomain family TFs
Other Globodera pallida TFs

1135 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AB10302.1 Alternaria brassicicola AB10302.1 I 0.000
AGOS_AER071W Ashbya gossypii AGOS_AER071W I 0.000
fgenesh1_pm.00042_#_268 Aspergillus carbonarius fgenesh1_pm.00042_#_268 I 0.000
ACLA_020620 Aspergillus clavatus CADACLAG00002717 I 0.000
CADAFLAG00002691 Aspergillus flavus CADAFLAG00002691 I 0.000
AFUA_1G14750 Aspergillus fumigatus CADAFUAG00006891 I 0.000
ANIA_00817 Aspergillus nidulans CADANIAG00001843 I 0.000
CADANGAG00001277 Aspergillus niger CADANGAG00001277 I 0.000
EURHEDRAFT_512336 Aspergillus ruber EURHEDRAFT_512336 I 0.000
ATEG_00691 Aspergillus terreus CADATEAG00005769 I 0.000
M437DRAFT_61697 Aureobasidium melanogenum M437DRAFT_61697 I 0.000
M438DRAFT_147774 Aureobasidium pullulans M438DRAFT_147774 I 0.000
AUEXF2481DRAFT_311834 Aureobasidium subglaciale AUEXF2481DRAFT_311834 I 0.000
BAUCODRAFT_120448 Baudoinia compniacensis BAUCODRAFT_120448 I 0.000
BBA_01441 Beauveria bassiana BBA_01441 I 0.000
COCC4DRAFT_141470 Bipolaris maydis COCC4DRAFT_141470 I 0.000
COCMIDRAFT_8853 Bipolaris oryzae COCMIDRAFT_8853 I 0.000
COCSADRAFT_185038 Bipolaris sorokiniana COCSADRAFT_185038 I 0.000
COCVIDRAFT_42340 Bipolaris victoriae COCVIDRAFT_42340 I 0.000
COCCADRAFT_35826 Bipolaris zeicola COCCADRAFT_35826 I 0.000
BDDG_09794 Blastomyces dermatitidis BDDG_09794 I 0.000
AWRI1499_3112 Brettanomyces bruxellensis AWRI1499_3112 I 0.000
PVAR5_1442 Byssochlamys spectabilis PVAR5_1442 I 0.000
CaO19.13374 Candida albicans CaO19.13374 I 0.000
CaO19.5953 Candida albicans CaO19.5953 I 0.000
CD36_84830 Candida dubliniensis CD36_84830 I 0.000
CAGL0D00682g Candida glabrata CAGL0D00682g I 0.000
CAGL0M09955g Candida glabrata CAGL0M09955g I 0.000
PGUG_02203 Candida guilliermondii PGUG_02203 I 0.000
CLUG_05237 Candida lusitaniae CLUG_05237 I 0.000
G210_2438 Candida maltosa G210_2438 I 0.000
CORT_0C01760 Candida orthopsilosis CORT_0C01760 I 0.000
CPAG_02863 Candida parapsilosis CPAG_02863 I 0.000
CANTEDRAFT_136954 Candida tenuis CANTEDRAFT_136954 I 0.000
CTRG_02503 Candida tropicalis CTRG_02503 I 0.000
A1O1_07090 Capronia coronata A1O1_07090 I 0.000
A1O3_04264 Capronia epimyces A1O3_04264 I 0.000
PV04_02740 Capronia semiimmersa PV04_02740 N 0.000
CHGG_01658 Chaetomium globosum CHGG_01658 I 0.000
CTHT_0058170 Chaetomium thermophilum CTHT_0058170 N 0.000
Z519_09367 Cladophialophora bantiana Z519_09367 N 0.000
G647_05804 Cladophialophora carrionii G647_05804 N 0.000
PV07_01574 Cladophialophora immunda PV07_01574 N 0.000
A1O5_08144 Cladophialophora psammophila A1O5_08144 N 0.000
A1O7_02576 Cladophialophora yegresii A1O7_02576 N 0.000
CLUG_05237 Clavispora lusitaniae CLUG_05237 I 0.000
CIMG_03255 Coccidioides immitis CIMG_03255 I 0.000
CPC735_009250 Coccidioides posadasii CPC735_009250 I 0.000
estExt_fgenesh1_pg.C_170193 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_170193 I 0.000
W97_08713 Coniosporium apollinis W97_08713 I 0.000
CCM_05399 Cordyceps militaris CCM_05399 I 0.000
HMPREF1541_07180 Cyphellophora europaea HMPREF1541_07180 N 0.000
DEHA2D11748g Debaryomyces hansenii DEHA2D11748g I 0.000
DOTSEDRAFT_51823 Dothistroma septosporum DOTSEDRAFT_51823 I 0.000
EPUS_02373 Endocarpon pusillum EPUS_02373 N 0.000
Ecym_3253 Eremothecium cymbalariae Ecym_3253 I 0.000
A1O9_07866 Exophiala aquamarina A1O9_07866 N 0.000
HMPREF1120_04491 Exophiala dermatitidis HMPREF1120_04491 I 0.000
PV10_03433 Exophiala mesophila PV10_03433 N 0.000
PV06_07675 Exophiala oligosperma PV06_07675 I 0.000
PV11_04834 Exophiala sideris PV11_04834 N 0.000
PV08_03512 Exophiala spinifera PV08_03512 N 0.000
PV05_07500 Exophiala xenobiotica PV05_07500 N 0.000
Z517_04487 Fonsecaea pedrosoi Z517_04487 N 0.000
GGTG_10100 Gaeumannomyces graminis GGTG_10100 I 0.000
M7I_6817 Glarea lozoyensis M7I_6817 I 0.000
CMQ_3345 Grosmannia clavigera CMQ_3345 N 0.000
HCBG_01463 Histoplasma capsulatum HCBG_01463 I 0.000
KAFR_0A05850 Kazachstania africana KAFR_0A05850 I 0.000
KNAG_0B06200 Kazachstania naganishii KNAG_0B06200 I 0.000
KLTH0D14718g Kluyveromyces thermotolerans KLTH0D14718g I 0.000
Kwal_4156 Kluyveromyces waltii Kwal_4156 I 0.000
PAS_chr4_0169 Komagataella pastoris PAS_chr4_0169 I 0.000
KUCA_T00000649001 Kuraishia capsulata KUCA_T00000649001 I 0.000
LALA0_S03e06964g Lachancea lanzarotensis LALA0_S03e06964g I 0.000
KLTH0D14718g Lachancea thermotolerans KLTH0D14718g I 0.000
LEMA_P092020.1 Leptosphaeria maculans LEMA_P092020.1 I 0.000
LELG_02885 Lodderomyces elongisporus LELG_02885 I 0.000
MPH_04552 Macrophomina phaseolina MPH_04552 I 0.000
MBM_03501 Marssonina brunnea MBM_03501 N 0.000
MAM_05286 Metarhizium album MAM_05286 I 0.000
X797_004862 Metarhizium robertsii X797_004862 I 0.000
PGUG_02203 Meyerozyma guilliermondii PGUG_02203 I 0.000
MCYG_06487 Microsporum canis MCYG_06487 I 0.000
MGYG_06954 Microsporum gypseum MGYG_06954 I 0.000
GNLVRS01_PISO0K03222g Millerozyma farinosa GNLVRS01_PISO0K03222g I 0.000
GNLVRS01_PISO0L03223g Millerozyma farinosa GNLVRS01_PISO0L03223g I 0.000
estExt_fgenesh1_pg.C_90338 Mycosphaerella fijiensis estExt_fgenesh1_pg.C_90338 I 0.000
estExt_fgenesh1_pm.C_chr_10304 Mycosphaerella graminicola estExt_fgenesh1_pm.C_chr_10304 I 0.000
NCAS_0A02570 Naumovozyma castellii NCAS_0A02570 I 0.000
NCAS_0J01590 Naumovozyma castellii NCAS_0J01590 I 0.000
NDAI_0D04320 Naumovozyma dairenensis NDAI_0D04320 I 0.000
NDAI_0J02360 Naumovozyma dairenensis NDAI_0J02360 I 0.000
UCRNP2_3551 Neofusicoccum parvum UCRNP2_3551 I 0.000
NFIA_010650 Neosartorya fischeri CADNFIAG00001974 I 0.000
NCU02621 Neurospora crassa NCU02621 N 0.000
estExt_fgenesh3_pm.C_20637 Neurospora discreta estExt_fgenesh3_pm.C_20637 N 0.000
NEUTE1DRAFT_126435 Neurospora tetrasperma NEUTE1DRAFT_126435 N 0.000
HPODL_00600 Ogataea parapolymorpha HPODL_00600 I 0.000
OIDMADRAFT_149888 Oidiodendron maius OIDMADRAFT_149888 I 0.000
F503_05202 Ophiostoma piceae uamh F503_05202 N 0.000
PABG_05941 Paracoccidioides brasiliensis PABG_05941 I 0.000
PAAG_05441 Paracoccidioides sp lutzii PAAG_05441 I 0.000
Pc16g13790 Penicillium chrysogenum Pc16g13790 I 0.000
PDIP_66170 Penicillium digitatum PDIP_66170 I 0.000
PEX1_093760 Penicillium expansum PEX1_093760 I 0.000
PITC_047260 Penicillium italicum PITC_047260 I 0.000
PMAA_073990 Penicillium marneffei PMAA_073990 I 0.000
PDE_00574 Penicillium oxalicum PDE_00574 I 0.000
PCH_Pc16g13790 Penicillium rubens PCH_Pc16g13790 I 0.000
U727_00432192271 Penicillium solitum U727_00432192271 I 0.000
SNOG_11501 Phaeosphaeria nodorum SNOG_11501 I 0.000
JL09_g4045 Pichia kudriavzevii JL09_g4045 I 0.000
XP_002493573.1 Pichia pastoris XP_002493573.1 I 0.000
estExt_gwp_genewisePlus_worm.C_chr_1.20975 Pichia stipitis estExt_gwp_genewisePlus_worm.C_chr_1.20975 I 0.000
PODANS_1_4460 Podospora anserina PODANS_1_4460 I 0.000
MYCFIDRAFT_215154 Pseudocercospora fijiensis MYCFIDRAFT_215154 I 0.000
GMDG_00559 Pseudogymnoascus destructans GMDG_00559 N 0.000
V499_02445 Pseudogymnoascus pannorum V499_02445 N 0.000
PTT_09059 Pyrenophora teres PTT_09059 I 0.000
PTRG_04689 Pyrenophora triticirepentis PTRG_04689 I 0.000
Z518_02572 Rhinocladiella mackenziei Z518_02572 N 0.000
SU7_2383 Saccharomyces arboricola SU7_2383 I 0.000
17461_YLR403W Saccharomyces bayanus 17461_YLR403W I 0.000
Scas_Contig719.24 Saccharomyces castellii Scas_Contig719.24 I 0.000
SFP1 Saccharomyces cerevisiae YLR403W D 0.000
SKUD_206617 Saccharomyces kudriavzevii SKUD_206617 I 0.000
15714_YLR403W Saccharomyces mikatae 15714_YLR403W I 0.000
15331_YLR403W Saccharomyces paradoxus 15331_YLR403W I 0.000
AACERI_AaceriAER071W Saccharomycetaceae sp ashbya aceri AACERI_AaceriAER071W I 0.000
SAPIO_CDS1423 Scedosporium apiospermum SAPIO_CDS1423 I 0.000
PICST_81274 Scheffersomyces stipitis PICST_81274 I 0.000
SPOG_00344 Schizosaccharomyces cryophilus SPOG_00344 I 0.000
SJAG_03241 Schizosaccharomyces japonicus SJAG_03241 I 0.000
SOCG_04198 Schizosaccharomyces octosporus SOCG_04198 I 0.000
sfp1 Schizosaccharomyces pombe SPAC16.05c I 0.000
SBOR_0866 Sclerotinia borealis SBOR_0866 N 0.000
SS1G_05845 Sclerotinia sclerotiorum SS1G_05845 N 0.000
SETTUDRAFT_87041 Setosphaeria turcica SETTUDRAFT_87041 I 0.000
SPAPADRAFT_62197 Spathaspora passalidarum SPAPADRAFT_62197 I 0.000
HMPREF1624_03059 Sporothrix schenckii HMPREF1624_03059 N 0.000
S40288_02803 Stachybotrys chartarum S40288_02803 I 0.000
S40285_08847 Stachybotrys chlorohalonata S40285_08847 I 0.000
SNOG_11500 Stagonospora nodorum SNOG_11500 I 0.000
PMAA_073990 Talaromyces marneffei PMAA_073990 I 0.000
TSTA_094550 Talaromyces stipitatus TSTA_094550 I 0.000
TBLA_0I03040 Tetrapisispora blattae TBLA_0I03040 I 0.000
TPHA_0B00710 Tetrapisispora phaffii TPHA_0B00710 I 0.000
TPHA_0B02140 Tetrapisispora phaffii TPHA_0B02140 I 0.000
THITE_2121456 Thielavia terrestris THITE_2121456 N 0.000
VHEMI04961 Torrubiella hemipterigena VHEMI04961 I 0.000
TRIATDRAFT_140885 Trichoderma atroviride TRIATDRAFT_140885 I 0.000
TRIREDRAFT_122680 Trichoderma reesei TRIREDRAFT_122680 I 0.000
TRIVIDRAFT_208206 Trichoderma virens TRIVIDRAFT_208206 I 0.000
TEQG_05013 Trichophyton equinum TEQG_05013 I 0.000
H101_05070 Trichophyton interdigitale H101_05070 I 0.000
TESG_04731 Trichophyton tonsurans TESG_04731 I 0.000
TRV_02130 Trichophyton verrucosum TRV_02130 I 0.000
UREG_07103 Uncinocarpus reesii UREG_07103 I 0.000
UV8b_2245 Ustilaginoidea virens UV8b_2245 I 0.000
Kpol_1002p4 Vanderwaltozyma polyspora Kpol_1002p4 I 0.000
Kpol_1055p71 Vanderwaltozyma polyspora Kpol_1055p71 I 0.000
BN7_5712 Wickerhamomyces ciferrii BN7_5712 I 0.000
YALI0_F11487g Yarrowia lipolytica YALI0_F11487g I 0.000
ZBAI_02717 Zygosaccharomyces bailii ZBAI_02717 I 0.000
ZBAI_08964 Zygosaccharomyces bailii ZBAI_08964 I 0.000
ZYRO0B12738g Zygosaccharomyces rouxii ZYRO0B12738g I 0.000
Mycgr3G98356 Zymoseptoria tritici Mycgr3G98356 I 0.000