GPLIN_001485000 (Globodera pallida)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 GPLIN_001485000 T234075_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.760 0.545
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.760 0.545
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.760 0.545
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.760 0.545
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.760 0.545
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.760 0.545
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.760 0.545
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.760 0.545
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.760 0.545
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.722 0.409
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.722 0.409
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.722 0.409
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GPLIN_001485000 Homeodomain 170 213

Links

Other Homeodomain family TFs
Other Globodera pallida TFs

1226 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACRE_057790 Acremonium chrysogenum ACRE_057790 N
M378DRAFT_184361 Amanita muscaria M378DRAFT_184361 N
AOL_s00043g47 Arthrobotrys oligospora AOL_s00043g47 N
ARB_00838 Arthroderma benhamiae ARB_00838 I
ARB_06070 Arthroderma benhamiae ARB_06070 N
MCYG_02012 Arthroderma otae MCYG_02012 I
CADAFLAG00013433 Aspergillus flavus CADAFLAG00013433 N
AFUA_4G04502 Aspergillus fumigatus CADAFUAG00001430 N
CADANGAG00010969 Aspergillus niger CADANGAG00010969 N
CADAORAG00012206 Aspergillus oryzae CADAORAG00012206 N
EURHEDRAFT_462177 Aspergillus ruber EURHEDRAFT_462177 N
M437DRAFT_56721 Aureobasidium melanogenum M437DRAFT_56721 N
M438DRAFT_272047 Aureobasidium pullulans M438DRAFT_272047 N
AUEXF2481DRAFT_4075 Aureobasidium subglaciale AUEXF2481DRAFT_4075 N
24664 Aureococcus anophagefferens 24664 N
BAUCODRAFT_151200 Baudoinia compniacensis BAUCODRAFT_151200 N
BBA_04216 Beauveria bassiana BBA_04216 N
COCC4DRAFT_137933 Bipolaris maydis COCC4DRAFT_137933 N
COCMIDRAFT_90826 Bipolaris oryzae COCMIDRAFT_90826 N
COCSADRAFT_237465 Bipolaris sorokiniana COCSADRAFT_237465 N
COCVIDRAFT_100540 Bipolaris victoriae COCVIDRAFT_100540 N
COCCADRAFT_23204 Bipolaris zeicola COCCADRAFT_23204 N
BDDG_07871 Blastomyces dermatitidis BDDG_07871 N
BGHDH14_bgh06000 Blumeria graminis BGHDH14_bgh06000 N
Bcin02g02960 Botrytis cinerea Bcin02g02960 N
A1O1_04043 Capronia coronata A1O1_04043 N
A1O3_01459 Capronia epimyces A1O3_01459 N
PV04_04511 Capronia semiimmersa PV04_04511 I
PV04_05986 Capronia semiimmersa PV04_05986 N
CAOG_00281 Capsaspora owczarzaki CAOG_00281 N
Z519_07578 Cladophialophora bantiana Z519_07578 N
G647_06910 Cladophialophora carrionii G647_06910 I
PV07_04143 Cladophialophora immunda PV07_04143 N
A1O5_07765 Cladophialophora psammophila A1O5_07765 N
A1O7_05617 Cladophialophora yegresii A1O7_05617 N
CIMG_08549 Coccidioides immitis CIMG_08549 N
CPC735_062070 Coccidioides posadasii CPC735_062070 N
estExt_Genewise1Plus.C_50691 Cochliobolus heterostrophus C5 estExt_Genewise1Plus.C_50691 N
CFIO01_04547 Colletotrichum fioriniae CFIO01_04547 N
CGGC5_1651 Colletotrichum gloeosporioides CGGC5_1651 N
GLRG_05271 Colletotrichum graminicola GLRG_05271 N
Cob_03924 Colletotrichum orbiculare Cob_03924 N
CSUB01_10826 Colletotrichum sublineola CSUB01_10826 N
W97_04615 Coniosporium apollinis W97_04615 N
estExt_Genewise1Plus.C_21911 Cryphonectria parasitica estExt_Genewise1Plus.C_21911 N
fgenesh1_pg.C_scaffold_2000187 Cryphonectria parasitica fgenesh1_pg.C_scaffold_2000187 I
CNI03130 Cryptococcus neoformans CNI03130 N
HMPREF1541_00864 Cyphellophora europaea HMPREF1541_00864 N
DACRYDRAFT_21288 Dacryopinax sp DACRYDRAFT_21288 I
H072_3239 Dactylellina haptotyla H072_3239 N
DICSQDRAFT_139749 Dichomitus squalens DICSQDRAFT_139749 I
DOTSEDRAFT_73714 Dothistroma septosporum DOTSEDRAFT_73714 N
DRE_06964 Drechslerella stenobrocha DRE_06964 I
EPUS_01915 Endocarpon pusillum EPUS_01915 N
A1O9_03914 Exophiala aquamarina A1O9_03914 N
PV10_07698 Exophiala mesophila PV10_07698 N
PV06_00857 Exophiala oligosperma PV06_00857 N
PV11_00595 Exophiala sideris PV11_00595 N
PV08_00880 Exophiala spinifera PV08_00880 N
PV05_05603 Exophiala xenobiotica PV05_05603 N
Z517_00530 Fonsecaea pedrosoi Z517_00530 N
FFUJ_08331 Fusarium fujikuroi FFUJ_08331 N
FGRRES_10868 Fusarium graminearum FGRRES_10868 N
FOXG_12803 Fusarium oxysporum FOXG_12803 N
FPSE_09836 Fusarium pseudograminearum FPSE_09836 N
NechaG40194 Fusarium solani NechaG40194 N
FVEG_11544 Fusarium verticillioides FVEG_11544 N
ENSGMOG00000000596 Gadus morhua ENSGMOG00000000596 I
GGTG_10719 Gaeumannomyces graminis GGTG_10719 N
GUITHDRAFT_54513 Guillardia theta GUITHDRAFT_54513 N
HCBG_08291 Histoplasma capsulatum HCBG_08291 N
XP_002155719.1 Hydra magnipapillata XP_002155719.1 I
LDEC001032 Leptinotarsa decemlineata LDEC001032 I
LEMA_P076740.1 Leptosphaeria maculans LEMA_P076740.1 N
MPH_02552 Macrophomina phaseolina MPH_02552 N
MGG_06971 Magnaporthe oryzae MGG_06971 N
MAPG_00013 Magnaporthe poae MAPG_00013 N
MELLADRAFT_42736 Melampsora laricipopulina MELLADRAFT_42736 I
MAM_02919 Metarhizium album MAM_02919 N
MANI_027126 Metarhizium anisopliae MANI_027126 N
MBR_04590 Metarhizium brunneum MBR_04590 N
MGU_04157 Metarhizium guizhouense MGU_04157 N
MAJ_01594 Metarhizium majus MAJ_01594 N
X797_007282 Metarhizium robertsii X797_007282 N
MVLG_00322 Microbotryum violaceum MVLG_00322 I
MCYG_02012 Microsporum canis MCYG_02012 I
MCYG_02334 Microsporum canis MCYG_02334 N
MGYG_07335 Microsporum gypseum MGYG_07335 N
E5Q_05471 Mixia osmundae E5Q_05471 I
E5Q_06685 Mixia osmundae E5Q_06685 I
e_gw1.5.1289.1 Mucor circinelloides e_gw1.5.1289.1 N
e_gw1.8.771.1 Mucor circinelloides e_gw1.8.771.1 N
estExt_Genewise1Plus.C_12171 Mucor circinelloides estExt_Genewise1Plus.C_12171 N
fgeneshMC_pg.4_#_769 Mucor circinelloides fgeneshMC_pg.4_#_769 I
gw1.1.2475.1 Mucor circinelloides gw1.1.2475.1 I
gw1.3.1948.1 Mucor circinelloides gw1.3.1948.1 I
gw1.8.772.1 Mucor circinelloides gw1.8.772.1 N
gw1.18.319.1 Mycosphaerella fijiensis gw1.18.319.1 N
e_gw1.3.1300.1 Mycosphaerella graminicola e_gw1.3.1300.1 N
e_gw1.12.536.1 Nectria haematococca e_gw1.12.536.1 N
NFIA_028860 Neosartorya fischeri CADNFIAG00002767 N
hsf-2 Neurospora crassa NCU08480 N
estExt_fgenesh2_pg.C_100130 Neurospora discreta estExt_fgenesh2_pg.C_100130 N
OIDMADRAFT_181379 Oidiodendron maius OIDMADRAFT_181379 N
OCS_04575 Ophiocordyceps sinensis OCS_04575 N
PABG_01939 Paracoccidioides brasiliensis PABG_01939 N
PAAG_01459 Paracoccidioides sp lutzii PAAG_01459 N
GSPATT00018299001 Paramecium tetraurelia GSPATT00018299001 N
GSPATT00018752001 Paramecium tetraurelia GSPATT00018752001 N
GSPATT00021345001 Paramecium tetraurelia GSPATT00021345001 N
GSPATT00035082001 Paramecium tetraurelia GSPATT00035082001 N
GSPATT00036815001 Paramecium tetraurelia GSPATT00036815001 N
PAXRUDRAFT_162335 Paxillus rubicundulus PAXRUDRAFT_162335 I
Pc13g06670 Penicillium chrysogenum Pc13g06670 N
PDIP_15740 Penicillium digitatum PDIP_15740 N
PEX1_020890 Penicillium expansum PEX1_020890 N
PMAA_085950 Penicillium marneffei PMAA_085950 N
PDE_05764 Penicillium oxalicum PDE_05764 N
PCH_Pc13g06670 Penicillium rubens PCH_Pc13g06670 N
U727_0043017041 Penicillium solitum U727_0043017041 N
fgeneshPB_pg.46__69 Phycomyces blakesleeanus fgeneshPB_pg.46__69 I
PISMIDRAFT_106875 Pisolithus microcarpus PISMIDRAFT_106875 I
M404DRAFT_154909 Pisolithus tinctorius M404DRAFT_154909 I
PNEG_02594 Pneumocystis murina PNEG_02594 I
MYCFIDRAFT_146678 Pseudocercospora fijiensis MYCFIDRAFT_146678 N
GMDG_00035 Pseudogymnoascus destructans GMDG_00035 N
V499_07683 Pseudogymnoascus pannorum V499_07683 N
PSEUBRA_SCAF16g05334 Pseudozyma brasiliensis PSEUBRA_SCAF16g05334 N
PSEUBRA_SCAF6g00904 Pseudozyma brasiliensis PSEUBRA_SCAF6g00904 I
PFL1_03124 Pseudozyma flocculosa PFL1_03124 N
PHSY_000528 Pseudozyma hubeiensis PHSY_000528 N
PHSY_005227 Pseudozyma hubeiensis PHSY_005227 I
PGTG_00887 Puccinia graminis PGTG_00887 I
PGTG_02256 Puccinia graminis PGTG_02256 I
PTT_06554 Pyrenophora teres PTT_06554 N
PTRG_08428 Pyrenophora triticirepentis PTRG_08428 N
Z518_08730 Rhinocladiella mackenziei Z518_08730 N
V565_116890 Rhizoctonia solani V565_116890 I
GLOINDRAFT_240353 Rhizophagus irregularis GLOINDRAFT_240353 I
GLOINDRAFT_71916 Rhizophagus irregularis GLOINDRAFT_71916 N
GLOINDRAFT_75775 Rhizophagus irregularis GLOINDRAFT_75775 I
GLOINDRAFT_82953 Rhizophagus irregularis GLOINDRAFT_82953 N
RO3G_02519 Rhizopus oryzae RO3G_02519 N
RO3G_05814 Rhizopus oryzae RO3G_05814 I
RO3G_08485 Rhizopus oryzae RO3G_08485 N
RO3G_15039 Rhizopus oryzae RO3G_15039 N
RO3G_15483 Rhizopus oryzae RO3G_15483 N
RHTO_01429 Rhodosporidium toruloides RHTO_01429 I
RHTO_05683 Rhodosporidium toruloides RHTO_05683 N
RTG_02021 Rhodotorula glutinis RTG_02021 N
RTG_02995 Rhodotorula glutinis RTG_02995 I
nRc.2.0.1.g30983 Romanomermis culicivorax nRc.2.0.1.g30983 I
nRc.2.0.1.g38503 Romanomermis culicivorax nRc.2.0.1.g38503 I
SAPIO_CDS6676 Scedosporium apiospermum SAPIO_CDS6676 I
SBOR_3380 Sclerotinia borealis SBOR_3380 N
SERLA73DRAFT_66913 Serpula lacrymans SERLA73DRAFT_66913 N
SETTUDRAFT_34274 Setosphaeria turcica SETTUDRAFT_34274 N
SMAC_00003 Sordaria macrospora SMAC_00003 N
SEPMUDRAFT_47596 Sphaerulina musiva SEPMUDRAFT_47596 N
SPPG_01116 Spizellomyces punctatus SPPG_01116 I
SPPG_03494 Spizellomyces punctatus SPPG_03494 N
SPPG_05445 Spizellomyces punctatus SPPG_05445 I
sr13089 Sporisorium reilianum sr13089 N
sr14110 Sporisorium reilianum sr14110 I
SNOG_08309 Stagonospora nodorum SNOG_08309 N
SMAR008659 Strigamia maritima SMAR008659 I
SPAL_0000387600 Strongyloides papillosus SPAL_0000387600 I
SSTP_0000347500 Strongyloides stercoralis SSTP_0000347500 N
SVE_1156000 Strongyloides venezuelensis SVE_1156000 I
PMAA_085950 Talaromyces marneffei PMAA_085950 N
TSTA_121070 Talaromyces stipitatus TSTA_121070 N
TBLA_0A02000 Tetrapisispora blattae TBLA_0A02000 I
K437DRAFT_224239 Tilletiaria anomala K437DRAFT_224239 I
VHEMI09490 Torrubiella hemipterigena VHEMI09490 N
BN946_scf185014.g98 Trametes cinnabarina BN946_scf185014.g98 I
fgeneshTM_pg.1_#_391 Tremella mesenterica fgeneshTM_pg.1_#_391 N
TRIATDRAFT_174226 Trichoderma atroviride TRIATDRAFT_174226 N
TRIREDRAFT_27357 Trichoderma reesei TRIREDRAFT_27357 N
TRIREDRAFT_78688 Trichoderma reesei TRIREDRAFT_78688 I
TRIVIDRAFT_125026 Trichoderma virens TRIVIDRAFT_125026 N
TEQG_06155 Trichophyton equinum TEQG_06155 I
H101_00214 Trichophyton interdigitale H101_00214 N
H101_05876 Trichophyton interdigitale H101_05876 I
H102_04635 Trichophyton rubrum H102_04635 I
H105_04657 Trichophyton soudanense H105_04657 I
TESG_06359 Trichophyton tonsurans TESG_06359 N
TESG_06833 Trichophyton tonsurans TESG_06833 I
TRV_00290 Trichophyton verrucosum TRV_00290 N
TRV_07496 Trichophyton verrucosum TRV_07496 I
GSTUM_00004466001 Tuber melanosporum GSTUM_00004466001 N
UV8b_4500 Ustilaginoidea virens UV8b_4500 N
UHOR_03142 Ustilago hordei UHOR_03142 N
UHOR_04781 Ustilago hordei UHOR_04781 I
UM03053 Ustilago maydis UM03053 I
UM05182 Ustilago maydis UM05182 N
PV09_01119 Verruconis gallopava PV09_01119 N
VDAG_07492 Verticillium dahliae VDAG_07492 N
J056_001839 Wallemia ichthyophaga J056_001839 I
YALI0_D04785g Yarrowia lipolytica YALI0_D04785g I
Mycgr3G38379 Zymoseptoria tritici Mycgr3G38379 N