CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

HmN_000190500 *(Hymenolepis microstoma)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00046 (Homeobox)	IPR001356	HmN_000190500	T234291_2.00	WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Nkx6-1 M00466_2.00	Mus musculus	NDTDATNRN	NYNATHAHN	PBM Berger et al.(2008) Nkx6-1_2825	0.855	0.930
HGTX M03869_2.00	Drosophila melanogaster	DTAATKRN	NYMATTAH	SELEX Nitta et al.(2015) HGTX_1	0.855	0.930
HGTX M03870_2.00	Drosophila melanogaster	DTAATKRN	NYMATTAH	SELEX Nitta et al.(2015) HGTX_2	0.855	0.930
HGTX M06542_2.00	Drosophila melanogaster	DTAATKA	TMATTAH	B1H Mathelier et al.(2014) MA0191.1	0.855	0.930
HGTX M06360_2.00	Drosophila melanogaster	DDTAATKA	TMATTAHH	B1H Zhu et al.(2011) Hgtx_Cell_FBgn0040318	0.855	0.930
HGTX M06361_2.00	Drosophila melanogaster	NWTAATKA	TMATTAWN	B1H Zhu et al.(2011) Hgtx_SOLEXA_FBgn0040318	0.855	0.930
NKX6-1 M09151_2.00	Homo sapiens	RAHWRATKDSNWWWTRATD	HATYAWWWNSHMATYWDTY	Misc Kulakovskiy et al.(2013) NKX61_HUMAN.H11MO.0.B	0.855	0.930
Nkx6-1 M09200_2.00	Mus musculus	HNWRATKDNHWWWTRATDR	YHATYAWWWDNHMATYWND	Misc Kulakovskiy et al.(2013) NKX61_MOUSE.H11MO.0.A	0.855	0.930
Nkx6-1 M09573_2.00	Mus musculus	NDTAATKR	YMATTAHN	Misc Heinz et al.(2010) Islet-Nkx6.1_GSE40975	0.855	0.930
NKX6-1 M10718_2.00	Homo sapiens	HWTTTAATKGRWT	AWYCMATTAAAWD	Transfac Matys et al.(2006) V$NKX61_01	0.855	0.930
NKX6-1 M10719_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$NKX61_08	0.855	0.930
Nkx6-3 M00522_2.00	Mus musculus	NDYDATNRN	NYNATHRHN	PBM Berger et al.(2008) Nkx6-3_3446	0.855	0.895
NKX6-3 M05242_2.00	Homo sapiens	NWTAATGRB	VYCATTAWN	SELEX Yin et al.(2017) NKX6-3_eDBD_HT-SELEX	0.855	0.895
NKX6-3 M05243_2.00	Homo sapiens	DWTAATGRB	VYCATTAWH	SELEX Yin et al.(2017) NKX6-3_eDBD_Methyl-HT-SELEX	0.855	0.895
NKX6-2 M05184_2.00	Homo sapiens	DTAATTRN	NYAATTAH	SELEX Yin et al.(2017) NKX6-2_eDBD_HT-SELEX	0.846	0.912
NKX6-2 M05186_2.00	Homo sapiens	WTAATKAB	VTMATTAW	SELEX Yin et al.(2017) NKX6-2_FL_HT-SELEX	0.846	0.912
NKX6-2 M10711_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$NKX62_Q2	0.846	0.912
NKX6-2 M05185_2.00	Homo sapiens	NTMATKRN	NYMATKAN	SELEX Yin et al.(2017) NKX6-2_eDBD_Methyl-HT-SELEX	0.846	0.912
NKX6-2 M05187_2.00	Homo sapiens	WTAATKAB	VTMATTAW	SELEX Yin et al.(2017) NKX6-2_FL_Methyl-HT-SELEX	0.846	0.912
CBG20882 M01244_2.00	Caenorhabditis briggsae	NDHDATDRN	NYHATHDHN	PBM Lambert et al.(2019) pTH11477	0.811	0.754
Q0N4H9_NEMVE M02165_2.00	Nematostella vectensis	NNYRWWNNN	NNNWWYRNN	PBM Weirauch et al.(2014) pTH6101	0.685	0.561
NEMVEDRAFT_v1g129868 M02146_2.00	Nematostella vectensis	NYRAWNDNN	NNHNWTYRN	PBM Weirauch et al.(2014) pTH5749	0.679	0.561
NK7.1 M03847_2.00	Drosophila melanogaster	VTTAAAYGDTD	HAHCRTTTAAB	SELEX Nitta et al.(2015) NK7.1_1	0.629	0.632
NK7.1 M03848_2.00	Drosophila melanogaster	NSTTAATTGVY	RBCAATTAASN	SELEX Nitta et al.(2015) NK7.1_2	0.629	0.632
NK7.1 M06524_2.00	Drosophila melanogaster	TTAATDR	YHATTAA	B1H Mathelier et al.(2014) MA0196.1	0.629	0.632
NK7.1 M06323_2.00	Drosophila melanogaster	NTTAATDR	YHATTAAN	B1H Zhu et al.(2011) NK7.1_Cell_FBgn0024321	0.629	0.632
NK7.1 M06324_2.00	Drosophila melanogaster	YTAATDR	YHATTAR	B1H Zhu et al.(2011) NK7.1_SOLEXA_FBgn0024321	0.629	0.632
For this family, TFs with SR scores > 0.599* will likely have a similar motif*