MhA1_Contig29.frz3.gene22 (Meloidogyne hapla)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 MhA1_Contig29.frz3.gene22 T235143_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Lmx1a
M00432_2.00 		Mus musculus
NNDATKRN
NYMATHNN		 PBM
Berger et al.(2008)
Lmx1a_2238 		0.681 0.722
Lmx1b
M00482_2.00 		Mus musculus
NDADDRN
NYHHTHN		 PBM
Berger et al.(2008)
Lmx1b_3433 		0.681 0.722
LMX1A
M03179_2.00 		Homo sapiens
NTAATTAV
BTAATTAN		 SELEX
Jolma et al.(2013)
LMX1A_1 		0.681 0.722
LMX1B
M03153_2.00 		Homo sapiens
NTWATTRN
NYAATWAN		 SELEX
Jolma et al.(2013)
LMX1B_1 		0.681 0.722
LMX1B
M03154_2.00 		Homo sapiens
DTAATTRV
BYAATTAH		 SELEX
Jolma et al.(2013)
LMX1B_2 		0.681 0.722
LMX1A
M05215_2.00 		Homo sapiens
YTAATTAV
BTAATTAR		 SELEX
Yin et al.(2017)
LMX1A_eDBD_HT-SELEX 		0.681 0.722
LMX1B
M05153_2.00 		Homo sapiens
NNNBTAATTAN
NTAATTAVNNN		 SELEX
Yin et al.(2017)
LMX1B_eDBD_HT-SELEX 		0.681 0.722
LMX1B
M05156_2.00 		Homo sapiens
NDDTTAATTAH
DTAATTAAHHN		 SELEX
Yin et al.(2017)
LMX1B_FL_HT-SELEX 		0.681 0.722
LMX1A
M05216_2.00 		Homo sapiens
DTAAYGHN
NDCRTTAH		 SELEX
Yin et al.(2017)
LMX1A_eDBD_Methyl-HT-SELEX_1 		0.681 0.722
LMX1A
M05217_2.00 		Homo sapiens
YTAATTRN
NYAATTAR		 SELEX
Yin et al.(2017)
LMX1A_eDBD_Methyl-HT-SELEX_2 		0.681 0.722
LMX1B
M05154_2.00 		Homo sapiens
NNNBYAATTRN
NYAATTRVNNN		 SELEX
Yin et al.(2017)
LMX1B_eDBD_Methyl-HT-SELEX_1 		0.681 0.722
LMX1B
M05155_2.00 		Homo sapiens
WTAAYGAR
YTCRTTAW		 SELEX
Yin et al.(2017)
LMX1B_eDBD_Methyl-HT-SELEX_2 		0.681 0.722
LMX1B
M05157_2.00 		Homo sapiens
TTAACGAG
CTCGTTAA		 SELEX
Yin et al.(2017)
LMX1B_FL_Methyl-HT-SELEX_1 		0.681 0.722
LMX1B
M05158_2.00 		Homo sapiens
NWWTTAATTAW
WTAATTAAWWN		 SELEX
Yin et al.(2017)
LMX1B_FL_Methyl-HT-SELEX_2 		0.681 0.722
CG32105
M03873_2.00 		Drosophila melanogaster
KTAATTAR
YTAATTAM		 SELEX
Nitta et al.(2015)
CG32105_1 		0.670 0.685
CG32105
M06546_2.00 		Drosophila melanogaster
YTAATTA
TAATTAR		 B1H
Mathelier et al.(2014)
MA0178.1 		0.670 0.685
CG32105
M06368_2.00 		Drosophila melanogaster
WYTAATTAV
BTAATTARW		 B1H
Zhu et al.(2011)
CG32105_Cell_FBgn0052105 		0.670 0.685
CG32105
M06369_2.00 		Drosophila melanogaster
NNTWATTR
YAATWANN		 B1H
Zhu et al.(2011)
CG32105_SOLEXA_FBgn0052105 		0.670 0.685
SNAPOd2T00003340001
M02228_2.00 		Oikopleura dioica
NNNTAATWWN
NWWATTANNN		 PBM
Weirauch et al.(2014)
pTH6369 		0.661 0.685
CG4328
M06538_2.00 		Drosophila melanogaster
WTWATTR
YAATWAW		 B1H
Mathelier et al.(2014)
MA0182.1 		0.649 0.685
CG4328
M06352_2.00 		Drosophila melanogaster
NWWWATTR
YAATWWWN		 B1H
Zhu et al.(2011)
CG4328_Cell_FBgn0036274 		0.649 0.685
CG4328
M06353_2.00 		Drosophila melanogaster
YAATWANN
NNTWATTR		 B1H
Zhu et al.(2011)
CG4328_SOLEXA_FBgn0036274 		0.649 0.685
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MhA1_Contig29.frz3.gene22 Homeodomain 256 309

Links

Other Homeodomain family TFs
Other Meloidogyne hapla TFs

356 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ZMAT1 Callithrix jacchus ENSCJAG00000019724 N
ENSCSAG00000009795 Chlorocebus sabaeus ENSCSAG00000009795 N
ZMAT1 Gorilla gorilla ENSGGOG00000025784 N
ZMAT1 Homo sapiens ENSG00000166432 N
ENSSTOG00000011140 Ictidomys tridecemlineatus ENSSTOG00000011140 N
ENSMMUP00000002870 Macaca fascicularis ENSMMUP00000002870 N
ZMAT1 Macaca mulatta ENSMMUG00000002151 N
ENSNLEG00000007550 Nomascus leucogenys ENSNLEG00000007550 N
ENSOPRG00000009950 Ochotona princeps ENSOPRG00000009950 N
ZMAT1 Otolemur garnettii ENSOGAG00000033601 N
ENSPTRG00000022112 Pan troglodytes ENSPTRG00000022112 N
ENSPTRG00000041840 Pan troglodytes ENSPTRG00000041840 N
ENSPPYG00000020561 Pongo abelii ENSPPYG00000020561 N
ENSTSYG00000007330 Tarsius syrichta ENSTSYG00000007330 N