nRc.2.0.1.g08520 (Romanomermis culicivorax)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 nRc.2.0.1.g08520 T235515_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.653 0.378
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.653 0.378
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.653 0.378
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.651 0.267
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.651 0.267
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.651 0.267
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.651 0.267
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.651 0.267
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.651 0.267
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.651 0.267
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.651 0.267
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.651 0.267
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
nRc.2.0.1.t08520-RA Homeodomain 264 308

Links

Other Homeodomain family TFs
Other Romanomermis culicivorax TFs

1176 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CaO19.11538 Candida albicans CaO19.11538 N
CaO19.4056 Candida albicans CaO19.4056 N
CD36_04890 Candida dubliniensis CD36_04890 N
PGUG_05533 Candida guilliermondii PGUG_05533 N
CLUG_05535 Candida lusitaniae CLUG_05535 N
G210_1773 Candida maltosa G210_1773 N
CORT_0B09130 Candida orthopsilosis CORT_0B09130 N
CPAG_05034 Candida parapsilosis CPAG_05034 N
CANTEDRAFT_136835 Candida tenuis CANTEDRAFT_136835 N
CTRG_04523 Candida tropicalis CTRG_04523 N
CLUG_05535 Clavispora lusitaniae CLUG_05535 N
DEHA2E07172g Debaryomyces hansenii DEHA2E07172g N
LELG_01761 Lodderomyces elongisporus LELG_01761 N
PGUG_05533 Meyerozyma guilliermondii PGUG_05533 N
GNLVRS01_PISO0K13826g Millerozyma farinosa GNLVRS01_PISO0K13826g N
GNLVRS01_PISO0L13827g Millerozyma farinosa GNLVRS01_PISO0L13827g N
estExt_gwp_genewisePlus_worm.C_chr_1.10003 Pichia stipitis estExt_gwp_genewisePlus_worm.C_chr_1.10003 N
PICST_80055 Scheffersomyces stipitis PICST_80055 N