nRc.2.0.1.g35501 (Romanomermis culicivorax)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 nRc.2.0.1.g35501 T235554_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HESX1
M03187_2.00 		Homo sapiens
NHTAATTRVH
DBYAATTADN		 SELEX
Jolma et al.(2013)
HESX1_1 		0.680 0.277
HESX1
M03188_2.00 		Homo sapiens
NTAATTRGYAATTAD
HTAATTRCYAATTAN		 SELEX
Jolma et al.(2013)
HESX1_2 		0.680 0.277
HESX1
M05227_2.00 		Homo sapiens
DYAATTRV
BYAATTRH		 SELEX
Yin et al.(2017)
HESX1_FL_HT-SELEX 		0.680 0.277
HESX1
M05228_2.00 		Homo sapiens
NYAATTRD
HYAATTRN		 SELEX
Yin et al.(2017)
HESX1_FL_Methyl-HT-SELEX 		0.680 0.277
NOBOX
M09135_2.00 		Homo sapiens
HTAATTRVB
VBYAATTAD		 Misc
Kulakovskiy et al.(2013)
NOBOX_HUMAN.H11MO.0.C 		0.640 0.383
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
nRc.2.0.1.t35501-RA Homeodomain 13 49
nRc.2.0.1.t35501-RA Homeodomain 50 59

Links

Other Homeodomain family TFs
Other Romanomermis culicivorax TFs

117 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OLONG_012664 Oryza longistaminata OLONG_012664 N
Sb10g019770 Sorghum bicolor Sb10g019770 N
Traes_4BL_9A17EA3B7 Triticum aestivum Traes_4BL_9A17EA3B7 I