PXEA_0002107901 (Protopolystoma xenopodis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 PXEA_0002107901 T235795_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Six3
M00483_2.00 		Mus musculus
NNNAYMN
NKRTNNN		 PBM
Berger et al.(2008)
Six3_1732 		0.822 0.807
SIX3
M05159_2.00 		Homo sapiens
NNYGATABBN
NVVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX 		0.822 0.807
SIX3
M10698_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX3_Q6 		0.822 0.807
SIX3
M05160_2.00 		Homo sapiens
NNYGATABVB
VBVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX 		0.822 0.807
Optix
M02124_2.00 		Drosophila melanogaster
NNNNNDATMN
NKATHNNNNN		 PBM
Weirauch et al.(2014)
pTH5437 		0.822 0.789
Optix
M03850_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
Optix_1 		0.822 0.789
Optix
M06526_2.00 		Drosophila melanogaster
TGATA
TATCA		 B1H
Mathelier et al.(2014)
MA0199.1 		0.822 0.789
Optix
M06327_2.00 		Drosophila melanogaster
HHVTGATA
TATCABDD		 B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360 		0.822 0.789
Optix
M06328_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360 		0.822 0.789
SIX6
M00326_2.00 		Homo sapiens
NNDATMB
VKATHNN		 PBM
Barrera et al.(2016)
SIX6_REF 		0.820 0.789
Six6
M00169_2.00 		Mus musculus
NNAYMNN
NNKRTNN		 PBM
Badis et al.(2009)
Six6_2267 		0.820 0.789
Six6
M00412_2.00 		Mus musculus
NNNTGATAYCN
NGRTATCANNN		 PBM
Berger et al.(2008)
Six6_2267 		0.820 0.789
six3
M02102_2.00 		Oryzias latipes
NNDAYMBNNN
NNNVKRTHNN		 PBM
Weirauch et al.(2014)
pTH5928 		0.820 0.789
SIX6
M05357_2.00 		Homo sapiens
NNYGATASVB
VBSTATCRNN		 SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX 		0.820 0.789
SIX6
M00325_2.00 		Homo sapiens
NNNDATMB
VKATHNNN		 PBM
Barrera et al.(2016)
SIX6_H141N 		0.820 0.789
SIX6
M05358_2.00 		Homo sapiens
VBVYAYCRNN
NNYGRTRBVB		 SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX 		0.820 0.789
SIX6
M00327_2.00 		Homo sapiens
NHDAYMBNN
NNVKRTHDN		 PBM
Barrera et al.(2016)
SIX6_T165A 		0.814 0.772
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PXEA_0002107901-mRNA-1 Homeodomain 11 67

Links

Other Homeodomain family TFs
Other Protopolystoma xenopodis TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGOS_ADL067C Ashbya gossypii AGOS_ADL067C I
CAGL0J03014g Candida glabrata CAGL0J03014g I
Ecym_4329 Eremothecium cymbalariae Ecym_4329 I
KAFR_0I01770 Kazachstania africana KAFR_0I01770 I
KAFR_0L00930 Kazachstania africana KAFR_0L00930 I
KNAG_0D01580 Kazachstania naganishii KNAG_0D01580 I
KNAG_0L01530 Kazachstania naganishii KNAG_0L01530 I
KLLA0_C08151g Kluyveromyces lactis KLLA0_C08151g I
KLTH0A04444g Kluyveromyces thermotolerans KLTH0A04444g I
Kwal_5842 Kluyveromyces waltii Kwal_5842 I
SAKL0F08734g Lachancea kluyveri SAKL0F08734g I
LALA0_S01e02388g Lachancea lanzarotensis LALA0_S01e02388g I
KLTH0A04444g Lachancea thermotolerans KLTH0A04444g I
NCAS_0A13540 Naumovozyma castellii NCAS_0A13540 I
NCAS_0E03320 Naumovozyma castellii NCAS_0E03320 I
NDAI_0A02490 Naumovozyma dairenensis NDAI_0A02490 I
NDAI_0E04810 Naumovozyma dairenensis NDAI_0E04810 I
SU7_1620 Saccharomyces arboricola SU7_1620 I
7027_YER064C Saccharomyces bayanus 7027_YER064C I
11559_YIL056W Saccharomyces bayanus 11559_YIL056W I
Scas_Contig701.7 Saccharomyces castellii Scas_Contig701.7 I
Scas_Contig704.29 Saccharomyces castellii Scas_Contig704.29 I
VHR2 Saccharomyces cerevisiae YER064C D
VHR1 Saccharomyces cerevisiae YIL056W D
SKUD_176205 Saccharomyces kudriavzevii SKUD_176205 I
6651_YER064C Saccharomyces mikatae 6651_YER064C I
6292_YER064C Saccharomyces paradoxus 6292_YER064C I
11035_YIL056W Saccharomyces paradoxus 11035_YIL056W I
AACERI_AaceriADL067C Saccharomycetaceae sp ashbya aceri AACERI_AaceriADL067C I
TBLA_0C04650 Tetrapisispora blattae TBLA_0C04650 I
TPHA_0J00900 Tetrapisispora phaffii TPHA_0J00900 I
TDEL_0H01980 Torulaspora delbrueckii TDEL_0H01980 I
Kpol_1066p52 Vanderwaltozyma polyspora Kpol_1066p52 I
ZBAI_05302 Zygosaccharomyces bailii ZBAI_05302 I
ZBAI_00133 Zygosaccharomyces bailii ZBAI_00133 I
ZYRO0C08250g Zygosaccharomyces rouxii ZYRO0C08250g I