scaffold360-EXSNAP2012.9 (Pristionchus exspectatus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 scaffold360-EXSNAP2012.9 T235978_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.814 0.630
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.814 0.630
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.814 0.630
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.814 0.630
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.814 0.630
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.814 0.630
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.814 0.630
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.814 0.630
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.814 0.630
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.720 0.413
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.720 0.413
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.720 0.413
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold360-EXSNAP2012.9 Homeodomain 87 132

Links

Other Homeodomain family TFs
Other Pristionchus exspectatus TFs

1246 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ZSCAN26 Callithrix jacchus ENSCJAG00000018640 N 0.000
ENSCAFG00000030304 Canis familiaris ENSCAFG00000030304 N 0.000
ENSCSAG00000008003 Chlorocebus sabaeus ENSCSAG00000008003 N 0.000
ZSCAN26 Dasypus novemcinctus ENSDNOG00000048739 N 0.000
ZSCAN26 Equus caballus ENSECAG00000006796 N 0.000
ENSMMUP00000009479 Macaca fascicularis ENSMMUP00000009479 N 0.000
ZSCAN26 Macaca mulatta ENSMMUG00000007227 N 0.000
ZSCAN26 Microcebus murinus ENSMICG00000010471 N 0.000
ZSCAN26 Oryctolagus cuniculus ENSOCUG00000016860 N 0.000
ZSCAN26 Procavia capensis ENSPCAG00000007308 N 0.000
ZSCAN26 Sus scrofa ENSSSCG00000001206 N 0.000
ZSCAN26 Tursiops truncatus ENSTTRG00000013221 N 0.000