SMUV_0000910101 (Syphacia muris)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 SMUV_0000910101 T236217_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
so
M02117_2.00 		Drosophila melanogaster
NDATMYNNN
NNNRKATHN		 PBM
Weirauch et al.(2014)
pTH5690 		0.827 0.764
so
M03800_2.00 		Drosophila melanogaster
NYGATAYB
VRTATCRN		 SELEX
Nitta et al.(2015)
so_1 		0.827 0.764
so
M03801_2.00 		Drosophila melanogaster
YKATAYNNNYGATAY
RTATCRNNNRTATMR		 SELEX
Nitta et al.(2015)
so_2 		0.827 0.764
so
M03802_2.00 		Drosophila melanogaster
YGATACGTATCR
YGATACGTATCR		 SELEX
Nitta et al.(2015)
so_3 		0.827 0.764
so
M03803_2.00 		Drosophila melanogaster
RTATCRYGATAC
GTATCRYGATAY		 SELEX
Nitta et al.(2015)
so_4 		0.827 0.764
so
M06497_2.00 		Drosophila melanogaster
TGATAC
GTATCA		 B1H
Mathelier et al.(2014)
MA0246.1 		0.827 0.764
so
M06268_2.00 		Drosophila melanogaster
NRTGATA
TATCAYN		 B1H
Zhu et al.(2011)
So_Cell_FBgn0003460 		0.827 0.764
so
M06269_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
So_SOLEXA_FBgn0003460 		0.827 0.764
Six2
M00425_2.00 		Mus musculus
NNAYMYNN
NNRKRTNN		 PBM
Berger et al.(2008)
Six2_2307 		0.826 0.764
Six1
M00512_2.00 		Mus musculus
NNDATMYNNN
NNNRKATHNN		 PBM
Berger et al.(2008)
Six1_0935 		0.826 0.764
SIX1
M05094_2.00 		Homo sapiens
NNYGATACVB
VBGTATCRNN		 SELEX
Yin et al.(2017)
SIX1_eDBD_HT-SELEX 		0.826 0.764
SIX1
M05096_2.00 		Homo sapiens
NNYGATAYVB
VBRTATCRNN		 SELEX
Yin et al.(2017)
SIX1_FL_HT-SELEX 		0.826 0.764
SIX2
M05285_2.00 		Homo sapiens
NNYGATACSB
VSGTATCRNN		 SELEX
Yin et al.(2017)
SIX2_eDBD_HT-SELEX 		0.826 0.764
SIX2
M05287_2.00 		Homo sapiens
NSGTRWCRYN
NRYGWYACSN		 SELEX
Yin et al.(2017)
SIX2_FL_HT-SELEX 		0.826 0.764
SIX1
M08130_2.00 		Homo sapiens
GWAACCTGANM
KNTCAGGTTWC		 ChIP-seq
Mathelier et al.(2014)
MA1118.1 		0.826 0.764
SIX2
M08133_2.00 		Homo sapiens
NNNTGWAACCTGAKMH
DKMTCAGGTTWCANNN		 ChIP-seq
Mathelier et al.(2014)
MA1119.1 		0.826 0.764
SIX1
M09142_2.00 		Homo sapiens
DGWAAYHTGABMYN
NRKVTCADRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX1_HUMAN.H11MO.0.A 		0.826 0.764
SIX2
M09157_2.00 		Homo sapiens
DGWAAYHHGABMH
DKVTCDDRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX2_HUMAN.H11MO.0.A 		0.826 0.764
Six2
M09185_2.00 		Mus musculus
DGWAAYHYRABMYB
VRKVTYRDRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX2_MOUSE.H11MO.0.A 		0.826 0.764
Six1
M09579_2.00 		Mus musculus
GWAAYHTGABMH
DKVTCADRTTWC		 Misc
Heinz et al.(2010)
Myoblast-Six1_GSE20150 		0.826 0.764
SIX1
M10684_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX1_Q3_01 		0.826 0.764
SIX1
M10685_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX1_Q3 		0.826 0.764
SIX1
M05095_2.00 		Homo sapiens
NNYGATABNB
VNVTATCRNN		 SELEX
Yin et al.(2017)
SIX1_eDBD_Methyl-HT-SELEX 		0.826 0.764
SIX1
M05097_2.00 		Homo sapiens
NNYGATAYSB
VSRTATCRNN		 SELEX
Yin et al.(2017)
SIX1_FL_Methyl-HT-SELEX 		0.826 0.764
SIX2
M05286_2.00 		Homo sapiens
NBRTATCRNN
NNYGATAYVN		 SELEX
Yin et al.(2017)
SIX2_eDBD_Methyl-HT-SELEX 		0.826 0.764
SIX2
M05288_2.00 		Homo sapiens
VBRTAWCRNN
NNYGWTAYVB		 SELEX
Yin et al.(2017)
SIX2_FL_Methyl-HT-SELEX 		0.826 0.764
Six4
M00563_2.00 		Drosophila melanogaster
NNDANMHNN
NNDKNTHNN		 PBM
Busser et al.(2012a)
Six4 		0.706 0.673
Six4
M06530_2.00 		Drosophila melanogaster
TGABAC
GTVTCA		 B1H
Mathelier et al.(2014)
MA0204.1 		0.706 0.673
Six4
M06334_2.00 		Drosophila melanogaster
WDDTGABAC
GTVTCAHHW		 B1H
Zhu et al.(2011)
Six4_Cell_FBgn0027364 		0.706 0.673
Six4
M06335_2.00 		Drosophila melanogaster
NTGAKACB
VGTMTCAN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_2_FBgn0027364 		0.706 0.673
Six4
M06336_2.00 		Drosophila melanogaster
NNNTGABA
TVTCANNN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_FBgn0027364 		0.706 0.673
Six4
M00461_2.00 		Mus musculus
NNKABMHNN
NNDKVTMNN		 PBM
Berger et al.(2008)
Six4_2860 		0.706 0.655
SIX4
M04939_2.00 		Homo sapiens
NVYGATACVB
VBGTATCRBN		 SELEX
Yin et al.(2017)
SIX4_eDBD_HT-SELEX 		0.706 0.655
Six4
M09198_2.00 		Mus musculus
DGDAABHNSASNNN
NNNSTSNDVTTHCH		 Misc
Kulakovskiy et al.(2013)
SIX4_MOUSE.H11MO.0.C 		0.706 0.655
SIX4
M10646_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX4_Q3 		0.706 0.655
SIX4
M04940_2.00 		Homo sapiens
NBGTAWCRHN
NDYGWTACVN		 SELEX
Yin et al.(2017)
SIX4_eDBD_Methyl-HT-SELEX 		0.706 0.655
SIX5
M08208_2.00 		Homo sapiens
GARWTGTAGT
ACTACAWYTC		 ChIP-seq
Contrino et al.(2012)
Mv121 		0.706 0.618
SIX5
M08209_2.00 		Homo sapiens
GGAGTTGT
ACAACTCC		 ChIP-seq
Contrino et al.(2012)
Mv123 		0.706 0.618
SIX5
M10738_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_01 		0.706 0.618
SIX5
M10739_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_02 		0.706 0.618
ceh-34
M00672_2.00 		Caenorhabditis elegans
NNNRDAWNNN
NNNWTHYNNN		 PBM
Narasimhan et al.(2015)
pTH9708 		0.668 0.582
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SMUV_0000910101-mRNA-1 Homeodomain 99 153

Links

Other Homeodomain family TFs
Other Syphacia muris TFs

539 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000014843 Ailuropoda melanoleuca ENSAMEG00000014843 I
Alligator_sinensis_CCG018001.1 Alligator sinensis Alligator_sinensis_CCG018001.1 I
DBP Anolis carolinensis ENSACAG00000015667 I
ENSAMXG00000016053 Astyanax mexicanus ENSAMXG00000016053 I
ENSAMXG00000009417 Astyanax mexicanus ENSAMXG00000009417 I
ENSBTAP00000008883-D1 Bos grunniens ENSBTAP00000008883-D1 I
DBP Bos taurus ENSBTAG00000006754 I
DBP Callithrix jacchus ENSCJAG00000000360 I
DBP Canis familiaris ENSCAFG00000003928 I
DBP Cavia porcellus ENSCPOG00000019616 I
ENSCSAG00000002831 Chlorocebus sabaeus ENSCSAG00000002831 I
dbpa Danio rerio ENSDARG00000063014 I
DBP Dasypus novemcinctus ENSDNOG00000016868 I
Dbp Dipodomys ordii ENSDORG00000010599 I
DBP Equus caballus ENSECAG00000014275 I
ENSFCAG00000030886 Felis catus ENSFCAG00000030886 I
ENSGACG00000010676 Gasterosteus aculeatus ENSGACG00000010676 I
DBP Gorilla gorilla ENSGGOG00000001444 I
DBP Homo sapiens ENSG00000105516 D
ENSSTOG00000024246 Ictidomys tridecemlineatus ENSSTOG00000024246 I
ENSLACG00000006062 Latimeria chalumnae ENSLACG00000006062 I
DBP Loxodonta africana ENSLAFG00000013079 I
ENSP00000222122 Macaca fascicularis ENSP00000222122 I
DBP Macaca mulatta ENSMMUG00000022160 I
ENSMEUG00000000663 Macropus eugenii ENSMEUG00000000663 I
ENSMICG00000016323 Microcebus murinus ENSMICG00000016323 I
ENSMPUG00000003854 Mustela putorius furo ENSMPUG00000003854 I
Dbp Mus musculus ENSMUSG00000059824 D
Myotis_brandtii_DBP_10017602 Myotis brandtii Myotis_brandtii_DBP_10017602 I
DBP Myotis lucifugus ENSMLUG00000025433 I
ENSNLEG00000004551 Nomascus leucogenys ENSNLEG00000004551 I
Ogr12886 Ophisaurus gracilis Ogr12886 I
ENSONIG00000007041 Oreochromis niloticus ENSONIG00000007041 I
ENSONIG00000012778 Oreochromis niloticus ENSONIG00000012778 I
ENSORLG00000011412 Oryzias latipes ENSORLG00000011412 I
DBP Otolemur garnettii ENSOGAG00000034399 I
ENSOARG00000011967 Ovis aries ENSOARG00000011967 I
DBP Pan troglodytes ENSPTRG00000011247 I
ENSPANG00000015471 Papio anubis ENSPANG00000015471 I
ENSPSIG00000015238 Pelodiscus sinensis ENSPSIG00000015238 I
ENSPFOG00000010189 Poecilia formosa ENSPFOG00000010189 I
ENSPFOG00000007430 Poecilia formosa ENSPFOG00000007430 I
Pvit_12136 Pogona vitticeps Pvit_12136 I
DBP Procavia capensis ENSPCAG00000011426 I
Dbp Rattus norvegicus ENSRNOG00000021027 I
DBP Sus scrofa ENSSSCG00000003148 I
ENSSSCG00000024294 Sus scrofa ENSSSCG00000024294 I
ENSTRUG00000003893 Takifugu rubripes ENSTRUG00000003893 I
ENSTRUG00000007098 Takifugu rubripes ENSTRUG00000007098 I
ENSTNIG00000008098 Tetraodon nigroviridis ENSTNIG00000008098 I
ENSTNIG00000004400 Tetraodon nigroviridis ENSTNIG00000004400 I
dbp Xenopus tropicalis XB-GENE-5995286 I
ENSXMAG00000014158 Xiphophorus maculatus ENSXMAG00000014158 I
ENSXMAG00000012054 Xiphophorus maculatus ENSXMAG00000012054 I