SPER_0002594901 (Spirometra erinaceieuropaei)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 SPER_0002594901 T236355_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Six2
M00425_2.00 		Mus musculus
NNAYMYNN
NNRKRTNN		 PBM
Berger et al.(2008)
Six2_2307 		0.846 0.836
Six1
M00512_2.00 		Mus musculus
NNDATMYNNN
NNNRKATHNN		 PBM
Berger et al.(2008)
Six1_0935 		0.846 0.836
so
M02117_2.00 		Drosophila melanogaster
NDATMYNNN
NNNRKATHN		 PBM
Weirauch et al.(2014)
pTH5690 		0.846 0.836
so
M03800_2.00 		Drosophila melanogaster
NYGATAYB
VRTATCRN		 SELEX
Nitta et al.(2015)
so_1 		0.846 0.836
so
M03801_2.00 		Drosophila melanogaster
YKATAYNNNYGATAY
RTATCRNNNRTATMR		 SELEX
Nitta et al.(2015)
so_2 		0.846 0.836
so
M03802_2.00 		Drosophila melanogaster
YGATACGTATCR
YGATACGTATCR		 SELEX
Nitta et al.(2015)
so_3 		0.846 0.836
so
M03803_2.00 		Drosophila melanogaster
RTATCRYGATAC
GTATCRYGATAY		 SELEX
Nitta et al.(2015)
so_4 		0.846 0.836
SIX1
M05094_2.00 		Homo sapiens
NNYGATACVB
VBGTATCRNN		 SELEX
Yin et al.(2017)
SIX1_eDBD_HT-SELEX 		0.846 0.836
SIX1
M05096_2.00 		Homo sapiens
NNYGATAYVB
VBRTATCRNN		 SELEX
Yin et al.(2017)
SIX1_FL_HT-SELEX 		0.846 0.836
SIX2
M05285_2.00 		Homo sapiens
NNYGATACSB
VSGTATCRNN		 SELEX
Yin et al.(2017)
SIX2_eDBD_HT-SELEX 		0.846 0.836
SIX2
M05287_2.00 		Homo sapiens
NSGTRWCRYN
NRYGWYACSN		 SELEX
Yin et al.(2017)
SIX2_FL_HT-SELEX 		0.846 0.836
so
M06497_2.00 		Drosophila melanogaster
TGATAC
GTATCA		 B1H
Mathelier et al.(2014)
MA0246.1 		0.846 0.836
so
M06268_2.00 		Drosophila melanogaster
NRTGATA
TATCAYN		 B1H
Zhu et al.(2011)
So_Cell_FBgn0003460 		0.846 0.836
so
M06269_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
So_SOLEXA_FBgn0003460 		0.846 0.836
SIX1
M08130_2.00 		Homo sapiens
GWAACCTGANM
KNTCAGGTTWC		 ChIP-seq
Mathelier et al.(2014)
MA1118.1 		0.846 0.836
SIX2
M08133_2.00 		Homo sapiens
NNNTGWAACCTGAKMH
DKMTCAGGTTWCANNN		 ChIP-seq
Mathelier et al.(2014)
MA1119.1 		0.846 0.836
SIX1
M09142_2.00 		Homo sapiens
DGWAAYHTGABMYN
NRKVTCADRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX1_HUMAN.H11MO.0.A 		0.846 0.836
SIX2
M09157_2.00 		Homo sapiens
DGWAAYHHGABMH
DKVTCDDRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX2_HUMAN.H11MO.0.A 		0.846 0.836
Six2
M09185_2.00 		Mus musculus
DGWAAYHYRABMYB
VRKVTYRDRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX2_MOUSE.H11MO.0.A 		0.846 0.836
Six1
M09579_2.00 		Mus musculus
GWAAYHTGABMH
DKVTCADRTTWC		 Misc
Heinz et al.(2010)
Myoblast-Six1_GSE20150 		0.846 0.836
SIX1
M10684_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX1_Q3_01 		0.846 0.836
SIX1
M10685_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX1_Q3 		0.846 0.836
SIX1
M05095_2.00 		Homo sapiens
NNYGATABNB
VNVTATCRNN		 SELEX
Yin et al.(2017)
SIX1_eDBD_Methyl-HT-SELEX 		0.846 0.836
SIX1
M05097_2.00 		Homo sapiens
NNYGATAYSB
VSRTATCRNN		 SELEX
Yin et al.(2017)
SIX1_FL_Methyl-HT-SELEX 		0.846 0.836
SIX2
M05286_2.00 		Homo sapiens
NBRTATCRNN
NNYGATAYVN		 SELEX
Yin et al.(2017)
SIX2_eDBD_Methyl-HT-SELEX 		0.846 0.836
SIX2
M05288_2.00 		Homo sapiens
VBRTAWCRNN
NNYGWTAYVB		 SELEX
Yin et al.(2017)
SIX2_FL_Methyl-HT-SELEX 		0.846 0.836
SIX5
M08208_2.00 		Homo sapiens
GARWTGTAGT
ACTACAWYTC		 ChIP-seq
Contrino et al.(2012)
Mv121 		0.719 0.655
SIX5
M08209_2.00 		Homo sapiens
GGAGTTGT
ACAACTCC		 ChIP-seq
Contrino et al.(2012)
Mv123 		0.719 0.655
SIX5
M10738_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_01 		0.719 0.655
SIX5
M10739_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_02 		0.719 0.655
Six4
M00461_2.00 		Mus musculus
NNKABMHNN
NNDKVTMNN		 PBM
Berger et al.(2008)
Six4_2860 		0.706 0.655
Six4
M00563_2.00 		Drosophila melanogaster
NNDANMHNN
NNDKNTHNN		 PBM
Busser et al.(2012a)
Six4 		0.706 0.655
SIX4
M04939_2.00 		Homo sapiens
NVYGATACVB
VBGTATCRBN		 SELEX
Yin et al.(2017)
SIX4_eDBD_HT-SELEX 		0.706 0.655
Six4
M06530_2.00 		Drosophila melanogaster
TGABAC
GTVTCA		 B1H
Mathelier et al.(2014)
MA0204.1 		0.706 0.655
Six4
M06334_2.00 		Drosophila melanogaster
WDDTGABAC
GTVTCAHHW		 B1H
Zhu et al.(2011)
Six4_Cell_FBgn0027364 		0.706 0.655
Six4
M06335_2.00 		Drosophila melanogaster
NTGAKACB
VGTMTCAN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_2_FBgn0027364 		0.706 0.655
Six4
M06336_2.00 		Drosophila melanogaster
NNNTGABA
TVTCANNN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_FBgn0027364 		0.706 0.655
Six4
M09198_2.00 		Mus musculus
DGDAABHNSASNNN
NNNSTSNDVTTHCH		 Misc
Kulakovskiy et al.(2013)
SIX4_MOUSE.H11MO.0.C 		0.706 0.655
SIX4
M10646_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX4_Q3 		0.706 0.655
SIX4
M04940_2.00 		Homo sapiens
NBGTAWCRHN
NDYGWTACVN		 SELEX
Yin et al.(2017)
SIX4_eDBD_Methyl-HT-SELEX 		0.706 0.655
ceh-34
M00672_2.00 		Caenorhabditis elegans
NNNRDAWNNN
NNNWTHYNNN		 PBM
Narasimhan et al.(2015)
pTH9708 		0.662 0.618
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SPER_0002594901-mRNA-1 Homeodomain 191 245

Links

Other Homeodomain family TFs
Other Spirometra erinaceieuropaei TFs

538 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL008190 Aedes aegypti AAEL008190 N
AALB000200 Anopheles albimanus AALB000200 I
AARA003793 Anopheles arabiensis AARA003793 I
AATE012724 Anopheles atroparvus AATE012724 I
ACHR008323 Anopheles christyi ACHR008323 I
ACOM029390 Anopheles coluzzii ACOM029390 I
ACUA027275 Anopheles culicifacies ACUA027275 I
AEPI007123 Anopheles epiroticus AEPI007123 I
AFAF019729 Anopheles farauti AFAF019729 I
AFUN010726 Anopheles funestus AFUN010726 I
AGAP009983 Anopheles gambiae AGAP009983 I
AMAM007264 Anopheles maculatus AMAM007264 I
AMEC011376 Anopheles melas AMEC011376 I
AMEM008272 Anopheles merus AMEM008272 I
AMIN006744 Anopheles minimus AMIN006744 I
AQUA009094 Anopheles quadriannulatus AQUA009094 I
ASIS002214 Anopheles sinensis ASIS002214 I
ASTEI03995 Anopheles stephensi ASTEI03995 I
GB46156 Apis mellifera GB46156 N
ACEP23825 Atta cephalotes ACEP23825 I
BGIBMGA009116 Bombyx mori BGIBMGA009116 I
Cflo_08671--XP_001121050.1_APIME Camponotus floridanus Cflo_08671--XP_001121050.1_APIME I
CLEC001934 Cimex lectularius CLEC001934 I
CpipJ_CPIJ003113 Culex pipiens CpipJ_CPIJ003113 I
CPIJ003113 Culex quinquefasciatus CPIJ003113 I
KGM_16315 Danaus plexippus KGM_16315 N
YQE_06569 Dendroctonus ponderosae YQE_06569 N
GF14859 Drosophila ananassae FBgn0091886 I
GG24687 Drosophila erecta FBgn0116818 I
GH10058 Drosophila grimshawi FBgn0117539 I
net Drosophila melanogaster FBgn0002931 D
GI16429 Drosophila mojavensis FBgn0139177 I
GL13900 Drosophila persimilis FBgn0151505 I
GA11011 Drosophila pseudoobscura FBgn0071067 I
GM16704 Drosophila sechellia FBgn0171617 I
GD22993 Drosophila simulans FBgn0194385 I
GJ16214 Drosophila virilis FBgn0203399 I
GK21091 Drosophila willistoni FBgn0223083 I
GE16494 Drosophila yakuba FBgn0234011 I
HHAL005211-PA Halyomorpha halys HHAL005211-PA I
Hsal_05296--XP_001121050.1_APIME Harpegnathos saltator Hsal_05296--XP_001121050.1_APIME N
HMEL016722 Heliconius melpomene HMEL016722 N
LDEC018964 Leptinotarsa decemlineata LDEC018964 N
LCUP006840 Lucilia cuprina LCUP006840 I
MCINX005941 Melitaea cinxia MCINX005941 N
MDOA010091 Musca domestica MDOA010091 I
PHUM129210 Pediculus humanus PHUM129210 I
PPAI008042 Phlebotomus papatasi PPAI008042 N
SINV15468 Solenopsis invicta SINV15468 I
TC005579 Tribolium castaneum TC005579 N
L798_06974 Zootermopsis nevadensis L798_06974 I