SROB_0000845601 (Schistosoma rodhaini)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 SROB_0000845601 T236398_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.688 0.444
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.688 0.444
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.688 0.444
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.688 0.444
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.688 0.444
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.688 0.444
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.688 0.444
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.688 0.444
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.688 0.444
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.675 0.370
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.675 0.370
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.675 0.370
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SROB_0000845601-mRNA-1 Homeodomain 198 225

Links

Other Homeodomain family TFs
Other Schistosoma rodhaini TFs

1208 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACYPI37104 Acyrthosiphon pisum ACYPI37104 N 0.000
ENSAMEG00000019033 Ailuropoda melanoleuca ENSAMEG00000019033 I 0.000
NEUROG1 Anolis carolinensis ENSACAG00000001255 I 0.000
ENSP00000242462-D1 Bos grunniens ENSP00000242462-D1 I 0.000
NEUROG3 Bos taurus ENSBTAG00000006431 I 0.000
estExt_fgenesh2_pg.C_90049 Branchiostoma floridae estExt_fgenesh2_pg.C_90049 I 0.000
estExt_fgenesh2_kg.C_7600001 Branchiostoma floridae estExt_fgenesh2_kg.C_7600001 I 0.000
NEUROG3 Callithrix jacchus ENSCJAG00000016485 I 0.000
Aan_R011089 Calypte anna Aan_R011089 N 0.000
NEUROG3 Canis familiaris ENSCAFG00000023597 I 0.000
CapteG70345 Capitella teleta CapteG70345 N 0.000
ENSCPOG00000004662 Cavia porcellus ENSCPOG00000004662 I 0.000
Cmyd_10012142 Chelonia mydas Cmyd_10012142 I 0.000
ENSCSAG00000018431 Chlorocebus sabaeus ENSCSAG00000018431 I 0.000
NEUROG3 Choloepus hoffmanni ENSCHOG00000004116 I 0.000
neurogenin Ciona intestinalis ENSCING00000004039 N 0.000
ENSCSAVG00000003501 Ciona savignyi ENSCSAVG00000003501 N 0.000
neurog3 Danio rerio ENSDARG00000016951 I 0.000
NEUROG3 Gorilla gorilla ENSGGOG00000002752 I 0.000
NEUROG3 Homo sapiens ENSG00000122859 I 0.000
ENSSTOG00000026959 Ictidomys tridecemlineatus ENSSTOG00000026959 I 0.000
ISCW020498 Ixodes scapularis ISCW020498 I 0.000
ENSLACG00000010446 Latimeria chalumnae ENSLACG00000010446 I 0.000
ENSLOCG00000011531 Lepisosteus oculatus ENSLOCG00000011531 I 0.000
NEUROG3 Loxodonta africana ENSLAFG00000028187 I 0.000
ENSP00000242462 Macaca fascicularis ENSP00000242462 I 0.000
NEUROG3 Macaca mulatta ENSMMUG00000008956 I 0.000
ENSMEUG00000016604 Macropus eugenii ENSMEUG00000016604 I 0.000
NEUROG3 Monodelphis domestica ENSMODG00000012228 I 0.000
ENSMPUG00000019699 Mustela putorius furo ENSMPUG00000019699 I 0.000
Neurog3 Mus musculus ENSMUSG00000044312 I 0.000
NEUROG3 Myotis lucifugus ENSMLUG00000024120 I 0.000
Ogr17531 Ophisaurus gracilis Ogr17531 I 0.000
Ogr11668 Ophisaurus gracilis Ogr11668 I 0.000
NEUROG1 Ornithorhynchus anatinus ENSOANG00000003865 I 0.000
NEUROG3 Oryctolagus cuniculus ENSOCUG00000027045 I 0.000
NEUROG3 Otolemur garnettii ENSOGAG00000005928 I 0.000
ENSOARG00000005615 Ovis aries ENSOARG00000005615 I 0.000
NEUROG3 Pan troglodytes ENSPTRG00000002576 I 0.000
ENSPANG00000003722 Papio anubis ENSPANG00000003722 I 0.000
ENSPSIG00000001125 Pelodiscus sinensis ENSPSIG00000001125 I 0.000
Pvit_00533 Pogona vitticeps Pvit_00533 I 0.000
Pvit_01880 Pogona vitticeps Pvit_01880 I 0.000
ENSPPYG00000002380 Pongo abelii ENSPPYG00000002380 I 0.000
Neurog3 Rattus norvegicus ENSRNOG00000024413 I 0.000
ENSSHAG00000002586 Sarcophilus harrisii ENSSHAG00000002586 I 0.000
ENSTGUG00000001245 Taeniopygia guttata ENSTGUG00000001245 N 0.000
ENSTSYG00000006329 Tarsius syrichta ENSTSYG00000006329 I 0.000
neurog1 Tetraodon nigroviridis ENSTNIG00000006360 N 0.000
NEUROG3 Tursiops truncatus ENSTTRG00000008216 I 0.000
neurog3.S Xenopus laevis XB-GENE-6055069 I 0.000
neurog2 Xenopus tropicalis XB-GENE-491040 N 0.000
neurog3 Xenopus tropicalis XB-GENE-876279 I 0.000
XP_002935814 Xenopus tropicalis XP_002935814 I 0.000