SVUK_0001245401 (Strongylus vulgaris)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 SVUK_0001245401 T236615_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.811 0.587
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.811 0.587
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.811 0.587
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.811 0.587
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.811 0.587
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.811 0.587
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.811 0.587
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.811 0.587
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.811 0.587
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.718 0.348
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.718 0.348
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.718 0.348
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SVUK_0001245401-mRNA-1 Homeodomain 54 99

Links

Other Homeodomain family TFs
Other Strongylus vulgaris TFs

1239 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000004903 Ailuropoda melanoleuca ENSAMEG00000004903 I 0.000
ENSCJAG00000000037 Callithrix jacchus ENSCJAG00000000037 I 0.000
ZNF211 Canis familiaris ENSCAFG00000028864 I 0.000
ENSCSAG00000001624 Chlorocebus sabaeus ENSCSAG00000001624 I 0.000
ENSECAG00000016657 Equus caballus ENSECAG00000016657 I 0.000
ZNF211 Homo sapiens ENSG00000121417 D 0.000
ENSMMUP00000007052 Macaca fascicularis ENSMMUP00000007052 I 0.000
ZNF211 Macaca mulatta ENSMMUG00000005333 I 0.000
ZNF154 Microcebus murinus ENSMICG00000006420 I 0.000
ENSMPUG00000006241 Mustela putorius furo ENSMPUG00000006241 I 0.000
ENSNLEG00000026613 Nomascus leucogenys ENSNLEG00000026613 I 0.000
ZNF211 Pan troglodytes ENSPTRG00000011565 I 0.000
ENSPANG00000017784 Papio anubis ENSPANG00000017784 I 0.000
ENSTSYG00000003349 Tarsius syrichta ENSTSYG00000003349 I 0.000