SVUK_0001874801 (Strongylus vulgaris)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 SVUK_0001874801 T236630_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.600 0.468
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.600 0.468
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.600 0.468
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.600 0.468
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.600 0.468
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.600 0.468
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.600 0.468
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.600 0.468
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.600 0.468
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SVUK_0001874801-mRNA-1 Homeodomain 21 67

Links

Other Homeodomain family TFs
Other Strongylus vulgaris TFs

75 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACYPI081976 Acyrthosiphon pisum ACYPI081976 I 0.605
AAEL004432 Aedes aegypti AAEL004432 I 0.599
Alligator_sinensis_CCG012525.1 Alligator sinensis Alligator_sinensis_CCG012525.1 I 0.602
Alligator_sinensis_CCG000828.1 Alligator sinensis Alligator_sinensis_CCG000828.1 I 0.602
AMAG_05753 Allomyces macrogynus AMAG_05753 N 0.600
ENSAPLG00000007835 Anas platyrhynchos ENSAPLG00000007835 I 0.602
ANCCAN_20314 Ancylostoma caninum ANCCAN_20314 I 0.605
ACAC_0001012701 Angiostrongylus cantonensis ACAC_0001012701 I 0.605
ACOC_0000069301 Angiostrongylus costaricensis ACOC_0000069301 I 0.605
AARA005585 Anopheles arabiensis AARA005585 I 0.599
AARA004375 Anopheles arabiensis AARA004375 I 0.605
ACOM035376 Anopheles coluzzii ACOM035376 I 0.602
ACUA004412 Anopheles culicifacies ACUA004412 I 0.605
ADIR002748 Anopheles dirus ADIR002748 I 0.605
AMAM007226 Anopheles maculatus AMAM007226 I 0.615
AMEC014658 Anopheles melas AMEC014658 I 0.605
AMEC005174 Anopheles melas AMEC005174 I 0.602
AMEM001610 Anopheles merus AMEM001610 I 0.602
AMIN002500 Anopheles minimus AMIN002500 I 0.605
Afo_R009549 Aptenodytes forsteri Afo_R009549 I 0.602
BGIBMGA008566 Bombyx mori BGIBMGA008566 I 0.599
Brh_R010491 Buceros rhinoceros Brh_R010491 I 0.602
BXY_1244000 Bursaphelenchus xylophilus BXY_1244000 N 0.729
VSX1 Callithrix jacchus ENSCJAG00000011818 I 0.600
Aan_R004115 Calypte anna Aan_R004115 I 0.602
DICVIV_11092 Dictyocaulus viviparus DICVIV_11092 I 0.605
DME_0000670301 Dracunculus medinensis DME_0000670301 I 0.605
ECANG7_02777 Echinococcus canadensis ECANG7_02777 I 0.601
EEL_0000229301 Elaeophora elaphi EEL_0000229301 I 0.605
EVEC_0000184101 Enterobius vermicularis EVEC_0000184101 I 0.605
D915_09868 Fasciola hepatica D915_09868 I 0.605
ENSFALG00000002899 Ficedula albicollis ENSFALG00000002899 I 0.602
Gfo_R010382 Geospiza fortis Gfo_R010382 I 0.602
HPBE_0000247501 Heligmosomoides bakeri HPBE_0000247501 I 0.642
Hba_10596 Heterorhabditis bacteriophora Hba_10596 I 0.783
VSX1 Homo sapiens ENSG00000100987 D 0.600
LCUP003716 Lucilia cuprina LCUP003716 I 0.605
LCUP012990 Lucilia cuprina LCUP012990 I 0.600
LLOJ008518 Lutzomyia longipalpis LLOJ008518 I 0.605
MCOS_0000376801 Mesocestoides corti MCOS_0000376801 I 0.605
ML089413a Mnemiopsis leidyi ML089413a N 0.630
Phox2b Mus musculus ENSMUSG00000012520 D 0.602
Myotis_brandtii_Otp_10035961 Myotis brandtii Myotis_brandtii_Otp_10035961 I 0.611
NBR_0001532201 Nippostrongylus brasiliensis NBR_0001532201 I 0.605
NBR_0001188301 Nippostrongylus brasiliensis NBR_0001188301 I 0.622
OESDEN_23981 Oesophagostomum dentatum OESDEN_23981 I 0.797
OFLC_0001281801 Onchocerca flexuosa OFLC_0001281801 I 0.605
Ogr12625 Ophisaurus gracilis Ogr12625 I 0.616
Ogr11012 Ophisaurus gracilis Ogr11012 I 0.602
ENSOCUG00000029553 Oryctolagus cuniculus ENSOCUG00000029553 I 0.681
ENSOCUG00000001021 Oryctolagus cuniculus ENSOCUG00000001021 I 0.602
PHUM171660 Pediculus humanus PHUM171660 I 0.610
PPAI007454 Phlebotomus papatasi PPAI007454 I 0.599
scaffold74-EXSNAP2012.8 Pristionchus exspectatus scaffold74-EXSNAP2012.8 I 0.788
scaffold360-EXSNAP2012.9 Pristionchus exspectatus scaffold360-EXSNAP2012.9 I 0.599
Ppa-unc-42 Pristionchus pacificus PPA12961 I 0.599
PXEA_0002999701 Protopolystoma xenopodis PXEA_0002999701 I 0.605
Phox2b Rattus norvegicus ENSRNOG00000051929 I 0.602
RPRC006801 Rhodnius prolixus RPRC006801 I 0.641
nRc.2.0.1.g13365 Romanomermis culicivorax nRc.2.0.1.g13365 I 0.602
SCUD_0000925401 Schistosoma curassoni SCUD_0000925401 I 0.605
Smp_161270 Schistosoma mansoni Smp_161270 I 0.605
SMRZ_0000538501 Schistosoma margrebowiei SMRZ_0000538501 I 0.605
SMTD_0000912801 Schistosoma mattheei SMTD_0000912801 I 0.605
M408DRAFT_217919 Serendipita vermifera M408DRAFT_217919 N 0.623
SINV25034 Solenopsis invicta SINV25034 I 0.605
SPER_0001733801 Spirometra erinaceieuropaei SPER_0001733801 I 0.605
L893_g32186 Steinernema glaseri L893_g32186 N 0.620
SPU_013464 Strongylocentrotus purpuratus SPU_013464 I 0.609
SVUK_0001921301 Strongylus vulgaris SVUK_0001921301 I 0.819
SVUK_0001995201 Strongylus vulgaris SVUK_0001995201 I 0.605
ENSSSCG00000024056 Sus scrofa ENSSSCG00000024056 I 0.674
tetur02g06020 Tetranychus urticae tetur02g06020 I 0.604
M407DRAFT_218356 Tulasnella calospora M407DRAFT_218356 N 0.656
Tal_R009524 Tyto alba Tal_R009524 I 0.602