SVUK_0001967701 (Strongylus vulgaris)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 SVUK_0001967701 T236633_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.811 0.587
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.811 0.587
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.811 0.587
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.811 0.587
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.811 0.587
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.811 0.587
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.811 0.587
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.811 0.587
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.811 0.587
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.718 0.348
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.718 0.348
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.718 0.348
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SVUK_0001967701-mRNA-1 Homeodomain 2 47

Links

Other Homeodomain family TFs
Other Strongylus vulgaris TFs

1239 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BBA_06732 Beauveria bassiana BBA_06732 I 0.000
CHGG_06463 Chaetomium globosum CHGG_06463 I 0.000
CTHT_0012910 Chaetomium thermophilum CTHT_0012910 I 0.000
CPUR_07579 Claviceps purpurea CPUR_07579 I 0.000
CFIO01_10829 Colletotrichum fioriniae CFIO01_10829 I 0.000
CGGC5_5306 Colletotrichum gloeosporioides CGGC5_5306 I 0.000
GLRG_02512 Colletotrichum graminicola GLRG_02512 I 0.000
CH063_01879 Colletotrichum higginsianum CH063_01879 I 0.000
Cob_05001 Colletotrichum orbiculare Cob_05001 I 0.000
CSUB01_03556 Colletotrichum sublineola CSUB01_03556 I 0.000
CCM_03259 Cordyceps militaris CCM_03259 I 0.000
estExt_fgenesh1_pm.C_40092 Cryphonectria parasitica estExt_fgenesh1_pm.C_40092 I 0.000
UCREL1_8806 Eutypa lata UCREL1_8806 N 0.000
FFUJ_06227 Fusarium fujikuroi FFUJ_06227 I 0.000
FGRRES_08713 Fusarium graminearum FGRRES_08713 I 0.000
FOXG_03084 Fusarium oxysporum FOXG_03084 I 0.000
FPSE_07698 Fusarium pseudograminearum FPSE_07698 I 0.000
NechaG36089 Fusarium solani NechaG36089 I 0.000
FVEG_01948 Fusarium verticillioides FVEG_01948 I 0.000
GGTG_11574 Gaeumannomyces graminis GGTG_11574 I 0.000
CMQ_5604 Grosmannia clavigera CMQ_5604 I 0.000
MGG_02746 Magnaporthe oryzae MGG_02746 I 0.000
MAPG_02337 Magnaporthe poae MAPG_02337 I 0.000
MAC_00884 Metarhizium acridum MAC_00884 I 0.000
MAM_03258 Metarhizium album MAM_03258 I 0.000
MANI_016883 Metarhizium anisopliae MANI_016883 I 0.000
MBR_08356 Metarhizium brunneum MBR_08356 I 0.000
MGU_03528 Metarhizium guizhouense MGU_03528 I 0.000
X797_003658 Metarhizium robertsii X797_003658 I 0.000
MYCTH_2297950 Myceliophthora thermophila MYCTH_2297950 I 0.000
e_gw1.2.1403.1 Nectria haematococca e_gw1.2.1403.1 I 0.000
NCU02182 Neurospora crassa NCU02182 D 0.000
estExt_Genewise1Plus.C_20368 Neurospora discreta estExt_Genewise1Plus.C_20368 I 0.000
NEUTE1DRAFT_70375 Neurospora tetrasperma NEUTE1DRAFT_70375 I 0.000
F503_00930 Ophiostoma piceae uamh F503_00930 I 0.000
PFICI_02798 Pestalotiopsis fici PFICI_02798 I 0.000
PODANS_1_19940 Podospora anserina PODANS_1_19940 I 0.000
SBOR_10031 Sclerotinia borealis SBOR_10031 I 0.000
SMAC_05266 Sordaria macrospora SMAC_05266 I 0.000
SPBR_01563 Sporothrix brasiliensis SPBR_01563 I 0.000
HMPREF1624_03664 Sporothrix schenckii HMPREF1624_03664 I 0.000
S40288_03454 Stachybotrys chartarum S40288_03454 I 0.000
S40285_07751 Stachybotrys chlorohalonata S40285_07751 I 0.000
THITE_2111819 Thielavia terrestris THITE_2111819 I 0.000
UCRPA7_2818 Togninia minima UCRPA7_2818 I 0.000
VHEMI06374 Torrubiella hemipterigena VHEMI06374 I 0.000
TRIATDRAFT_320325 Trichoderma atroviride TRIATDRAFT_320325 I 0.000
TRIREDRAFT_119999 Trichoderma reesei TRIREDRAFT_119999 I 0.000
TRIVIDRAFT_230570 Trichoderma virens TRIVIDRAFT_230570 I 0.000
UV8b_1775 Ustilaginoidea virens UV8b_1775 I 0.000
VDAG_02544 Verticillium dahliae VDAG_02544 I 0.000