CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

evm.TU.supercontig_90.16 *(Carica papaya)* HSF
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00447 (HSF_DNA-bind)	IPR000232	evm.TU.supercontig_90.16	T243149_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
HSFA1E M06939_2.00	Arabidopsis thaliana	RGAANNTTCTAGA	TCTAGAANNTTCY	Dap-seq OMalley et al.(2016) HSFA1E_col_a	0.527	0.851
HSFA1E M06940_2.00	Arabidopsis thaliana	RGAASNTTCTAGAAN	NTTCTAGAANSTTCY	Dap-seq OMalley et al.(2016) HSFA1E_colamp_a	0.527	0.851
HSFA1B M06948_2.00	Arabidopsis thaliana	GAANNTTCTAGA	TCTAGAANNTTC	Dap-seq OMalley et al.(2016) HSF3_col_a	0.503	0.839
HSFA1B M06949_2.00	Arabidopsis thaliana	TTCYRG	CYRGAA	Dap-seq OMalley et al.(2016) HSF3_colamp_a	0.503	0.839
HSFA4A M06947_2.00	Arabidopsis thaliana	NNNRGAABBTTCTAGAANN	NNTTCTAGAAVVTTCYNNN	Dap-seq OMalley et al.(2016) HSF21_col_a	0.501	0.736
HSFA6B M06941_2.00	Arabidopsis thaliana	RGAASNTTCTAGA	TCTAGAANSTTCY	Dap-seq OMalley et al.(2016) HSFA6B_colamp_a	0.491	0.759
HSFA6B M06942_2.00	Arabidopsis thaliana	RGAABNTTCTRGAAN	NTTCYAGAANVTTCY	Dap-seq OMalley et al.(2016) HSFA6B_col	0.491	0.759
HSFB4 M06936_2.00	Arabidopsis thaliana	RGAASNTTCTAGAAN	NTTCTAGAANSTTCY	Dap-seq OMalley et al.(2016) HSFB4_col_a	0.479	0.747
HSFA6A M06950_2.00	Arabidopsis thaliana	GAASNTTCTAGAANNW	WNNTTCTAGAANSTTC	Dap-seq OMalley et al.(2016) HSFA6A_col_a	0.443	0.678
HSFA6A M06951_2.00	Arabidopsis thaliana	GAASNTTCTAGAA	TTCTAGAANSTTC	Dap-seq OMalley et al.(2016) HSFA6A_colamp_a	0.443	0.678
HSFB2A M00869_2.00	Arabidopsis thaliana	NNNNNTTCB	VGAANNNNN	PBM Franco-Zorrilla et al.(2014) HSFB2A	0.433	0.678
HSFB2A M06952_2.00	Arabidopsis thaliana	GAANNTTCYAGA	TCTRGAANNTTC	Dap-seq OMalley et al.(2016) HSF6_col_a	0.433	0.678
HSFB2B M06945_2.00	Arabidopsis thaliana	RGAANNTTCTAGAA	TTCTAGAANNTTCY	Dap-seq OMalley et al.(2016) HSF7_col_a	0.431	0.701
HSFB2B M06946_2.00	Arabidopsis thaliana	RGAANNTTCTAGAA	TTCTAGAANNTTCY	Dap-seq OMalley et al.(2016) HSF7_colamp_a	0.431	0.701
HSFC1 M00868_2.00	Arabidopsis thaliana	NDTCBNNN	NNNVGAHN	PBM Franco-Zorrilla et al.(2014) HSFC1	0.418	0.690
HSFC1 M06943_2.00	Arabidopsis thaliana	GAASNTTCTAG	CTAGAANSTTC	Dap-seq OMalley et al.(2016) HSFC1_col_a	0.418	0.690
HSFC1 M06944_2.00	Arabidopsis thaliana	RGAASNTTCTAGAANVW	WBNTTCTAGAANSTTCY	Dap-seq OMalley et al.(2016) HSFC1_colamp_a	0.418	0.690
HSFB3 M06937_2.00	Arabidopsis thaliana	RRAANMWTCTAGAAV	BTTCTAGAWKNTTYY	Dap-seq OMalley et al.(2016) HSFB3_col_a	0.397	0.655
HSFB3 M06938_2.00	Arabidopsis thaliana	AABSTTCTAGAAN	NTTCTAGAASVTT	Dap-seq OMalley et al.(2016) HSFB3_colamp_a	0.397	0.655
For this family, TFs with SR scores > 0.318* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
evm.model.supercontig_90.16	HSF	41	131	FLSKTYDMVDDPATDGIVSWSSTNNSFVVWKPPEFARDLLPKHFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRSITRRK

Links
Other HSF family TFs
Other *Carica papaya* TFs

1498 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
AGABI2DRAFT_114029	Agaricus bisporus	AGABI2DRAFT_114029	N
M378DRAFT_155247	Amanita muscaria	M378DRAFT_155247	N
BOTBODRAFT_32594	Botryobasidium botryosum	BOTBODRAFT_32594	N
CC1G_00538	Coprinopsis cinerea	CC1G_00538	N
GALMADRAFT_53514	Galerina marginata	GALMADRAFT_53514	N
M413DRAFT_439328	Hebeloma cylindrosporum	M413DRAFT_439328	N
estExt_fgenesh2_pm.C_10150	Heterobasidion annosum	estExt_fgenesh2_pm.C_10150	N
HETIRDRAFT_431343	Heterobasidion irregulare	HETIRDRAFT_431343	N
HYDPIDRAFT_110944	Hydnomerulius pinastri	HYDPIDRAFT_110944	N
JAAARDRAFT_29176	Jaapia argillacea	JAAARDRAFT_29176	N
K443DRAFT_104822	Laccaria amethystina	K443DRAFT_104822	N
LACBIDRAFT_301339	Laccaria bicolor	LACBIDRAFT_301339	N
PAXRUDRAFT_828316	Paxillus rubicundulus	PAXRUDRAFT_828316	N
PHACADRAFT_247972	Phanerochaete carnosa	PHACADRAFT_247972	N
fgenesh1_pg.C_scaffold_13000261	Phanerochaete chrysosporium	fgenesh1_pg.C_scaffold_13000261	N
M404DRAFT_8219	Pisolithus tinctorius	M404DRAFT_8219	N
PLEOSDRAFT_1063194	Pleurotus ostreatus	PLEOSDRAFT_1063194	N
SCLCIDRAFT_90919	Scleroderma citrinum	SCLCIDRAFT_90919	N
CY34DRAFT_36919	Suillus luteus	CY34DRAFT_36919	N

evm.TU.supercontig_90.16 (Carica papaya) HSF

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1498 Related TFs

evm.TU.supercontig_90.16 **(Carica papaya)
HSF**