ENSLACG00000001546 (Latimeria chalumnae)
IRF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00605 (IRF) IPR001346 ENSLACG00000001546 T244127_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IRF1
M08142_2.00 		Homo sapiens
RWANNGAAASYGAAASYRNNN
NNNYRSTTTCRSTTTCNNTWY		 ChIP-seq
Mathelier et al.(2014)
MA0050.2 		0.857 0.857
IRF1
M09233_2.00 		Homo sapiens
NRAANNGAAASWGAAASHRN
NYDSTTTCWSTTTCNNTTYN		 Misc
Kulakovskiy et al.(2013)
IRF1_HUMAN.H11MO.0.A 		0.857 0.857
Irf1
M09242_2.00 		Mus musculus
VRAANNGAAASYGAAASYVN
NBRSTTTCRSTTTCNNTTYB		 Misc
Kulakovskiy et al.(2013)
IRF1_MOUSE.H11MO.0.A 		0.857 0.857
IRF1
M09594_2.00 		Homo sapiens
GAAASTGAAASY
RSTTTCASTTTC		 Misc
Heinz et al.(2010)
PBMC-IRF1_GSE43036 		0.857 0.857
IRF1
M10879_2.00 		Homo sapiens
SAAAASYGAAASY
RSTTTCRSTTTTS		 Transfac
Matys et al.(2006)
V$IRF1_01 		0.857 0.857
IRF1
M10880_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF1_03 		0.857 0.857
IRF1
M10881_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF1_Q5 		0.857 0.857
IRF1
M10882_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF1_Q6 		0.857 0.857
IRF2
M05545_2.00 		Homo sapiens
NGAAAVYGAAAS
STTTCRBTTTCN		 SELEX
Yin et al.(2017)
IRF2_FL_HT-SELEX 		0.829 0.829
IRF2
M02691_2.00 		Homo sapiens
SGAAAGYGAAASYNWWHH
DDWWNRSTTTCRCTTTCS		 SELEX
Mathelier et al.(2014)
MA0051.1 		0.829 0.829
IRF2
M09237_2.00 		Homo sapiens
NRAANNGAAASYGAAASYRV
BYRSTTTCRSTTTCNNTTYN		 Misc
Kulakovskiy et al.(2013)
IRF2_HUMAN.H11MO.0.A 		0.829 0.829
IRF2
M09596_2.00 		Homo sapiens
NRAAVNRRAASB
VSTTYYNBTTYN		 Misc
Heinz et al.(2010)
Erythroblas-IRF2_GSE36985 		0.829 0.829
IRF2
M10892_2.00 		Homo sapiens
GAAAAGYGAAASY
RSTTTCRCTTTTC		 Transfac
Matys et al.(2006)
V$IRF2_01 		0.829 0.829
IRF2
M10893_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF2_Q6 		0.829 0.829
IRF2
M05546_2.00 		Homo sapiens
NGAAASYGAAAS
STTTCRSTTTCN		 SELEX
Yin et al.(2017)
IRF2_FL_Methyl-HT-SELEX 		0.829 0.829
Irf2
M00805_2.00 		Mus musculus
NDWNHGAAAV
BTTTCDNWHN		 PBM
Weirauch et al.(2013)
pTH2835 		0.819 0.819
Irf2
M09245_2.00 		Mus musculus
NRAANNGAAASYGAAASYRV
BYRSTTTCRSTTTCNNTTYN		 Misc
Kulakovskiy et al.(2013)
IRF2_MOUSE.H11MO.0.B 		0.819 0.819
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLACP00000001728 IRF 7 112

Links

Other IRF family TFs
Other Latimeria chalumnae TFs

130 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Alligator_sinensis_CCG021728.1 Alligator sinensis Alligator_sinensis_CCG021728.1 N
ENSACAG00000001074 Anolis carolinensis ENSACAG00000001074 N
ENSAMXG00000025035 Astyanax mexicanus ENSAMXG00000025035 N
ENSP00000360069-D1 Bos grunniens ENSP00000360069-D1 N
ZNF831 Bos taurus ENSBTAG00000011940 N
Brh_R000153 Buceros rhinoceros Brh_R000153 N
Aan_R015780 Calypte anna Aan_R015780 N
ZNF831 Canis familiaris ENSCAFG00000012242 N
ZNF831 Cavia porcellus ENSCPOG00000004730 N
Cmyd_10020478 Chelonia mydas Cmyd_10020478 N
ENSCSAG00000015605 Chlorocebus sabaeus ENSCSAG00000015605 N
ZNF831 Dasypus novemcinctus ENSDNOG00000039522 N
ENSDORG00000000484 Dipodomys ordii ENSDORG00000000484 N
ZNF831 Equus caballus ENSECAG00000004219 N
ZNF831 Felis catus ENSFCAG00000000850 N
ENSFALG00000010699 Ficedula albicollis ENSFALG00000010699 N
ENSGMOG00000017750 Gadus morhua ENSGMOG00000017750 N
ENSGACG00000011250 Gasterosteus aculeatus ENSGACG00000011250 N
Gfo_R009549 Geospiza fortis Gfo_R009549 N
ZNF831 Gorilla gorilla ENSGGOG00000016623 N
ZNF831 Homo sapiens ENSG00000124203 N
ENSSTOG00000020220 Ictidomys tridecemlineatus ENSSTOG00000020220 N
ZNF831 Loxodonta africana ENSLAFG00000027534 N
ENSP00000360069 Macaca fascicularis ENSP00000360069 N
ENSMEUG00000011902 Macropus eugenii ENSMEUG00000011902 N
ENSMGAG00000015550 Meleagris gallopavo ENSMGAG00000015550 N
ENSMPUG00000007096 Mustela putorius furo ENSMPUG00000007096 N
Zfp831 Mus musculus ENSMUSG00000050600 N
Myotis_brandtii_ZNF831_10023550 Myotis brandtii Myotis_brandtii_ZNF831_10023550 N
ZNF831 Myotis lucifugus ENSMLUG00000002710 N
ENSNLEG00000009590 Nomascus leucogenys ENSNLEG00000009590 N
Ogr15311 Ophisaurus gracilis Ogr15311 N
ZNF831 Oryctolagus cuniculus ENSOCUG00000016865 N
ZNF831 Otolemur garnettii ENSOGAG00000026401 N
ENSOARG00000016025 Ovis aries ENSOARG00000016025 N
ZNF831 Pan troglodytes ENSPTRG00000013683 N
ENSPANG00000000370 Papio anubis ENSPANG00000000370 N
ENSPSIG00000005947 Pelodiscus sinensis ENSPSIG00000005947 N
ENSPFOG00000008819 Poecilia formosa ENSPFOG00000008819 N
Pvit_17317 Pogona vitticeps Pvit_17317 N
ENSPPYG00000011183 Pongo abelii ENSPPYG00000011183 N
ZNF831 Pteropus vampyrus ENSPVAG00000005227 N
Zfp831 Rattus norvegicus ENSRNOG00000024693 N
ENSSHAG00000011841 Sarcophilus harrisii ENSSHAG00000011841 N
ZNF831 Sus scrofa ENSSSCG00000007526 N
ENSTGUG00000008011 Taeniopygia guttata ENSTGUG00000008011 N
ZNF831 Tursiops truncatus ENSTTRG00000009388 N
Tal_R006729 Tyto alba Tal_R006729 N