irf4a (Oryzias latipes)
IRF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00605 (IRF) IPR001346 ENSORLG00000017242 T244299_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IRF4
M03334_2.00 		Homo sapiens
HCGAAACCGAAACYW
WRGTTTCGGTTTCGD		 SELEX
Jolma et al.(2013)
IRF4_1 		0.914 0.914
IRF4
M05539_2.00 		Homo sapiens
NYGAAACYGAAACYN
NRGTTTCRGTTTCRN		 SELEX
Yin et al.(2017)
IRF4_FL_HT-SELEX 		0.914 0.914
IRF4
M07978_2.00 		Homo sapiens
DNDVNNGWWVTGAVWVWN
NWBWBTCABWWCNNBHNH		 ChIP-seq
Gerstein et al.(2012)
GM12878_IRF4_HudsonAlpha 		0.914 0.914
IRF4
M09235_2.00 		Homo sapiens
NDWDRRGGAASTGARAVH
DBTYTCASTTCCYYHWHN		 Misc
Kulakovskiy et al.(2013)
IRF4_HUMAN.H11MO.0.A 		0.914 0.914
IRF4
M09595_2.00 		Homo sapiens
HNYGAAASYD
HRSTTTCRND		 Misc
Heinz et al.(2010)
GM12878-IRF4_GSE32465 		0.914 0.914
IRF4
M10885_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF4_07 		0.914 0.914
IRF4
M10886_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF4_08 		0.914 0.914
IRF4
M10887_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF4_Q5_01 		0.914 0.914
IRF4
M10888_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF4_Q5 		0.914 0.914
IRF4
M10889_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF4_Q6 		0.914 0.914
IRF4
M05540_2.00 		Homo sapiens
NYGAAASYGAWASHN
NDSTWTCRSTTTCRN		 SELEX
Yin et al.(2017)
IRF4_FL_Methyl-HT-SELEX 		0.914 0.914
Irf4
M00175_2.00 		Mus musculus
NNNYGAWASN
NSTWTCRNNN		 PBM
Badis et al.(2009)
Irf4_3476 		0.905 0.905
Irf4
M09243_2.00 		Mus musculus
NDAWVVRGAASTGARAVH
DBTYTCASTTCYBBWTHN		 Misc
Kulakovskiy et al.(2013)
IRF4_MOUSE.H11MO.0.A 		0.905 0.905
IRF8
M03335_2.00 		Homo sapiens
HCGAAACYGAAACY
RGTTTCRGTTTCGD		 SELEX
Jolma et al.(2013)
IRF8_1 		0.781 0.781
IRF8
M03336_2.00 		Homo sapiens
HCGAAACCGAAACT
AGTTTCGGTTTCGD		 SELEX
Jolma et al.(2013)
IRF8_2 		0.781 0.781
IRF8
M05541_2.00 		Homo sapiens
NYGAAASYGAAASHN
NDSTTTCRSTTTCRN		 SELEX
Yin et al.(2017)
IRF8_eDBD_HT-SELEX 		0.781 0.781
IRF8
M05543_2.00 		Homo sapiens
NCGAAACYGAAACYN
NRGTTTCRGTTTCGN		 SELEX
Yin et al.(2017)
IRF8_FL_HT-SELEX 		0.781 0.781
IRF8
M09236_2.00 		Homo sapiens
NDDDRRGGAASTGAAASYNN
NNRSTTTCASTTCCYYHHHN		 Misc
Kulakovskiy et al.(2013)
IRF8_HUMAN.H11MO.0.B 		0.781 0.781
Irf8
M09246_2.00 		Mus musculus
NDDDRRGGAASTGAAASYNN
NNRSTTTCASTTCCYYHHHN		 Misc
Kulakovskiy et al.(2013)
IRF8_MOUSE.H11MO.0.A 		0.781 0.781
IRF8
M10890_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ICSBP_Q6 		0.781 0.781
IRF8
M10891_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF8_Q6 		0.781 0.781
IRF8
M05542_2.00 		Homo sapiens
NYGAAASYGAAASYN
NRSTTTCRSTTTCRN		 SELEX
Yin et al.(2017)
IRF8_eDBD_Methyl-HT-SELEX 		0.781 0.781
IRF8
M05544_2.00 		Homo sapiens
NYGAAASYGAAACYD
HRGTTTCRSTTTCRN		 SELEX
Yin et al.(2017)
IRF8_FL_Methyl-HT-SELEX 		0.781 0.781
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000021575 IRF 6 111

Links

Other IRF family TFs
Other Oryzias latipes TFs

164 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
nAv.1.0.1.g04749 Acanthocheilonema viteae nAv.1.0.1.g04749 I 0.000
ACYPI001696 Acyrthosiphon pisum ACYPI001696 I 0.000
AAEL002769 Aedes aegypti AAEL002769 N 0.000
AARA009758 Anopheles arabiensis AARA009758 N 0.000
AARA009757 Anopheles arabiensis AARA009757 I 0.000
AATE019368 Anopheles atroparvus AATE019368 N 0.000
ACHR007729 Anopheles christyi ACHR007729 I 0.000
ACOM033416 Anopheles coluzzii ACOM033416 N 0.000
ACUA003826 Anopheles culicifacies ACUA003826 I 0.000
AEPI001687 Anopheles epiroticus AEPI001687 I 0.000
AFAF012033 Anopheles farauti AFAF012033 N 0.000
AGAP004052 Anopheles gambiae AGAP004052 N 0.000
AMEC020934 Anopheles melas AMEC020934 N 0.000
AMEM000031 Anopheles merus AMEM000031 N 0.000
AMIN002618 Anopheles minimus AMIN002618 I 0.000
AQUA008561 Anopheles quadriannulatus AQUA008561 I 0.000
ASTEI07078 Anopheles stephensi ASTEI07078 I 0.000
GB55033 Apis mellifera GB55033 N 0.000
ASU_00242 Ascaris suum ASU_00242 I 0.000
Bm5024 Brugia malayi Bm5024 I 0.000
Cflo_00868--XP_392355.3_APIME Camponotus floridanus Cflo_00868--XP_392355.3_APIME I 0.000
CapteG2449 Capitella teleta CapteG2449 N 0.000
CLEC000910 Cimex lectularius CLEC000910 N 0.000
csin108622 Clonorchis sinensis csin108622 N 0.000
CGI_10022026 Crassostrea gigas CGI_10022026 N 0.000
KGM_10139 Danaus plexippus KGM_10139 N 0.000
DAPPUDRAFT_290533 Daphnia pulex DAPPUDRAFT_290533 I 0.000
YQE_10516 Dendroctonus ponderosae YQE_10516 I 0.000
DME_0000841401 Dracunculus medinensis DME_0000841401 I 0.000
GF16857 Drosophila ananassae FBgn0093877 N 0.000
GG18089 Drosophila erecta FBgn0110306 N 0.000
GH21437 Drosophila grimshawi FBgn0128899 N 0.000
pros Drosophila melanogaster FBgn0004595 N 0.000
GI22696 Drosophila mojavensis FBgn0145423 N 0.000
GA14403 Drosophila pseudoobscura FBgn0074431 N 0.000
GM23939 Drosophila sechellia FBgn0178804 N 0.000
pros Drosophila simulans FBgn0025030 N 0.000
pros Drosophila virilis FBgn0028753 N 0.000
GK11290 Drosophila willistoni FBgn0213301 N 0.000
GE26090 Drosophila yakuba FBgn0243130 N 0.000
ECPE_0000538001 Echinostoma caproni ECPE_0000538001 N 0.000
EVEC_0001110501 Enterobius vermicularis EVEC_0001110501 I 0.000
HCOI01824000 Haemonchus contortus HCOI01824000 I 0.000
ISCW008733 Ixodes scapularis ISCW008733 N 0.000
LDEC004085 Leptinotarsa decemlineata LDEC004085 N 0.000
nLs.2.1.2.g05095 Litomosoides sigmodontis nLs.2.1.2.g05095 I 0.000
LotgiG183824 Lottia gigantea LotgiG183824 N 0.000
LLOJ001671 Lutzomyia longipalpis LLOJ001671 N 0.000
MDOA008728 Musca domestica MDOA008728 N 0.000
Ocbimv22022378m.g Octopus bimaculoides Ocbimv22022378m.g N 0.000
T265_07444 Opisthorchis viverrini T265_07444 N 0.000
PTRK_0001568700 Parastrongyloides trichosuri PTRK_0001568700 I 0.000
PHUM334550 Pediculus humanus PHUM334550 I 0.000
RPRC009271 Rhodnius prolixus RPRC009271 N 0.000
nRc.2.0.1.g38267 Romanomermis culicivorax nRc.2.0.1.g38267 N 0.000
Smp_162760 Schistosoma mansoni Smp_162760 N 0.000
SINV18378 Solenopsis invicta SINV18378 I 0.000
L596_g9976 Steinernema carpocapsae L596_g9976 I 0.000
L889_g22574 Steinernema feltiae L889_g22574 I 0.000
L893_g28279 Steinernema glaseri L893_g28279 I 0.000
L898_g8569 Steinernema monticolum L898_g8569 I 0.000
L892_g25141 Steinernema scapterisci L892_g25141 I 0.000
SMAR007154 Strigamia maritima SMAR007154 N 0.000
SPAL_0001624500 Strongyloides papillosus SPAL_0001624500 I 0.000
SSTP_0000359900 Strongyloides stercoralis SSTP_0000359900 I 0.000
SVE_0442300 Strongyloides venezuelensis SVE_0442300 I 0.000
tetur02g12740 Tetranychus urticae tetur02g12740 N 0.000
TC010596 Tribolium castaneum TC010596 N 0.000
EFV53283 Trichinella spiralis EFV53283 I 0.000
TMUE_s0183000500 Trichuris muris TMUE_s0183000500 I 0.000
D918_02805 Trichuris suis D918_02805 I 0.000
TTRE_0000134301 Trichuris trichiura TTRE_0000134301 I 0.000