Alligator_sinensis_CCG008430.1 (Alligator sinensis)
IRF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00605 (IRF) IPR001346 Alligator_sinensis_CCG008430.1 T244511_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IRF8
M03335_2.00 		Homo sapiens
HCGAAACYGAAACY
RGTTTCRGTTTCGD		 SELEX
Jolma et al.(2013)
IRF8_1 		0.981 0.981
IRF8
M03336_2.00 		Homo sapiens
HCGAAACCGAAACT
AGTTTCGGTTTCGD		 SELEX
Jolma et al.(2013)
IRF8_2 		0.981 0.981
IRF8
M05541_2.00 		Homo sapiens
NYGAAASYGAAASHN
NDSTTTCRSTTTCRN		 SELEX
Yin et al.(2017)
IRF8_eDBD_HT-SELEX 		0.981 0.981
IRF8
M05543_2.00 		Homo sapiens
NCGAAACYGAAACYN
NRGTTTCRGTTTCGN		 SELEX
Yin et al.(2017)
IRF8_FL_HT-SELEX 		0.981 0.981
IRF8
M09236_2.00 		Homo sapiens
NDDDRRGGAASTGAAASYNN
NNRSTTTCASTTCCYYHHHN		 Misc
Kulakovskiy et al.(2013)
IRF8_HUMAN.H11MO.0.B 		0.981 0.981
IRF8
M10890_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ICSBP_Q6 		0.981 0.981
IRF8
M10891_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF8_Q6 		0.981 0.981
IRF8
M05542_2.00 		Homo sapiens
NYGAAASYGAAASYN
NRSTTTCRSTTTCRN		 SELEX
Yin et al.(2017)
IRF8_eDBD_Methyl-HT-SELEX 		0.981 0.981
IRF8
M05544_2.00 		Homo sapiens
NYGAAASYGAAACYD
HRGTTTCRSTTTCRN		 SELEX
Yin et al.(2017)
IRF8_FL_Methyl-HT-SELEX 		0.981 0.981
Irf8
M09246_2.00 		Mus musculus
NDDDRRGGAASTGAAASYNN
NNRSTTTCASTTCCYYHHHN		 Misc
Kulakovskiy et al.(2013)
IRF8_MOUSE.H11MO.0.A 		0.971 0.971
Irf4
M00175_2.00 		Mus musculus
NNNYGAWASN
NSTWTCRNNN		 PBM
Badis et al.(2009)
Irf4_3476 		0.817 0.817
IRF4
M03334_2.00 		Homo sapiens
HCGAAACCGAAACYW
WRGTTTCGGTTTCGD		 SELEX
Jolma et al.(2013)
IRF4_1 		0.817 0.817
IRF4
M05539_2.00 		Homo sapiens
NYGAAACYGAAACYN
NRGTTTCRGTTTCRN		 SELEX
Yin et al.(2017)
IRF4_FL_HT-SELEX 		0.817 0.817
IRF4
M07978_2.00 		Homo sapiens
DNDVNNGWWVTGAVWVWN
NWBWBTCABWWCNNBHNH		 ChIP-seq
Gerstein et al.(2012)
GM12878_IRF4_HudsonAlpha 		0.817 0.817
IRF4
M09235_2.00 		Homo sapiens
NDWDRRGGAASTGARAVH
DBTYTCASTTCCYYHWHN		 Misc
Kulakovskiy et al.(2013)
IRF4_HUMAN.H11MO.0.A 		0.817 0.817
Irf4
M09243_2.00 		Mus musculus
NDAWVVRGAASTGARAVH
DBTYTCASTTCYBBWTHN		 Misc
Kulakovskiy et al.(2013)
IRF4_MOUSE.H11MO.0.A 		0.817 0.817
IRF4
M09595_2.00 		Homo sapiens
HNYGAAASYD
HRSTTTCRND		 Misc
Heinz et al.(2010)
GM12878-IRF4_GSE32465 		0.817 0.817
IRF4
M10885_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF4_07 		0.817 0.817
IRF4
M10886_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF4_08 		0.817 0.817
IRF4
M10887_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF4_Q5_01 		0.817 0.817
IRF4
M10888_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF4_Q5 		0.817 0.817
IRF4
M10889_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF4_Q6 		0.817 0.817
IRF4
M05540_2.00 		Homo sapiens
NYGAAASYGAWASHN
NDSTWTCRSTTTCRN		 SELEX
Yin et al.(2017)
IRF4_FL_Methyl-HT-SELEX 		0.817 0.817
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG008430.1 IRF 353 457

Links

Other IRF family TFs
Other Alligator sinensis TFs

154 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000005350 Ailuropoda melanoleuca ENSAMEG00000005350 I 0.000
ENSAPLG00000008131 Anas platyrhynchos ENSAPLG00000008131 I 0.000
ENSAPLG00000009362 Anas platyrhynchos ENSAPLG00000009362 I 0.000
SATB1 Anolis carolinensis ENSACAG00000007941 I 0.000
SATB2 Anolis carolinensis ENSACAG00000009821 I 0.000
Afo_R004114 Aptenodytes forsteri Afo_R004114 I 0.000
Afo_R015456 Aptenodytes forsteri Afo_R015456 I 0.000
ENSAMXG00000002186 Astyanax mexicanus ENSAMXG00000002186 I 0.000
ENSAMXG00000015155 Astyanax mexicanus ENSAMXG00000015155 I 0.000
ENSP00000401112-D1 Bos grunniens ENSP00000401112-D1 I 0.000
SATB2 Bos taurus ENSBTAG00000016334 I 0.000
SATB1 Bos taurus ENSBTAG00000021158 I 0.000
Brh_R001953 Buceros rhinoceros Brh_R001953 I 0.000
SATB1 Callithrix jacchus ENSCJAG00000003645 I 0.000
SATB2 Callithrix jacchus ENSCJAG00000004111 I 0.000
Aan_R006754 Calypte anna Aan_R006754 I 0.000
Aan_R010578 Calypte anna Aan_R010578 I 0.000
SATB2 Canis familiaris ENSCAFG00000010971 I 0.000
SATB2 Cavia porcellus ENSCPOG00000015198 I 0.000
ENSCSAG00000011380 Chlorocebus sabaeus ENSCSAG00000011380 I 0.000
SATB1 Choloepus hoffmanni ENSCHOG00000002142 I 0.000
SATB2 Choloepus hoffmanni ENSCHOG00000012005 I 0.000
satb2 Danio rerio ENSDARG00000061885 I 0.000
satb1b Danio rerio ENSDARG00000062621 I 0.000
SATB2 Dasypus novemcinctus ENSDNOG00000001292 I 0.000
SATB1 Dasypus novemcinctus ENSDNOG00000025323 I 0.000
Satb1 Dipodomys ordii ENSDORG00000005578 I 0.000
SATB2 Equus caballus ENSECAG00000010043 I 0.000
SATB1 Equus caballus ENSECAG00000023585 I 0.000
SATB1 Erinaceus europaeus ENSEEUG00000010435 I 0.000
SATB1 Felis catus ENSFCAG00000004295 I 0.000
SATB2 Felis catus ENSFCAG00000015781 I 0.000
ENSFALG00000004242 Ficedula albicollis ENSFALG00000004242 I 0.000
ENSFALG00000009258 Ficedula albicollis ENSFALG00000009258 I 0.000
ENSGMOG00000006865 Gadus morhua ENSGMOG00000006865 I 0.000
ENSGMOG00000013657 Gadus morhua ENSGMOG00000013657 I 0.000
SATB2 Gallus gallus ENSGALG00000008135 I 0.000
SATB1 Gallus gallus ENSGALG00000011254 I 0.000
SATB2 Gasterosteus aculeatus ENSGACG00000009037 I 0.000
satb1b Gasterosteus aculeatus ENSGACG00000013013 I 0.000
satb2 Gasterosteus aculeatus ENSGACG00000014437 I 0.000
Gfo_R001489 Geospiza fortis Gfo_R001489 I 0.000
Gfo_R015811 Geospiza fortis Gfo_R015811 I 0.000
SATB1 Gorilla gorilla ENSGGOG00000001779 I 0.000
SATB2 Gorilla gorilla ENSGGOG00000014123 I 0.000
SATB2 Homo sapiens ENSG00000119042 I 0.000
SATB1 Homo sapiens ENSG00000182568 D 0.000
ENSLACG00000005399 Latimeria chalumnae ENSLACG00000005399 I 0.000
ENSLACG00000017798 Latimeria chalumnae ENSLACG00000017798 I 0.000
ENSLOCG00000004032 Lepisosteus oculatus ENSLOCG00000004032 I 0.000
ENSLOCG00000006524 Lepisosteus oculatus ENSLOCG00000006524 I 0.000
SATB2 Loxodonta africana ENSLAFG00000002924 I 0.000
SATB1 Loxodonta africana ENSLAFG00000009015 I 0.000
ENSP00000333367 Macaca fascicularis ENSP00000333367 I 0.000
ENSP00000405420 Macaca fascicularis ENSP00000405420 I 0.000
ENSMMUG00000019009 Macaca mulatta ENSMMUG00000019009 I 0.000
ENSMEUG00000013091 Macropus eugenii ENSMEUG00000013091 I 0.000
SATB2 Meleagris gallopavo ENSMGAG00000007173 I 0.000
SATB1 Meleagris gallopavo ENSMGAG00000010929 I 0.000
SATB2 Microcebus murinus ENSMICG00000009378 I 0.000
SATB1 Microcebus murinus ENSMICG00000017153 I 0.000
SATB2 Monodelphis domestica ENSMODG00000012352 I 0.000
SATB1 Monodelphis domestica ENSMODG00000014765 I 0.000
ENSMPUG00000001406 Mustela putorius furo ENSMPUG00000001406 I 0.000
ENSMPUG00000007972 Mustela putorius furo ENSMPUG00000007972 I 0.000
Satb1 Mus musculus ENSMUSG00000023927 I 0.000
Satb2 Mus musculus ENSMUSG00000038331 I 0.000
Myotis_brandtii_Satb1_10034564 Myotis brandtii Myotis_brandtii_Satb1_10034564 I 0.000
Myotis_brandtii_Satb2_10019975 Myotis brandtii Myotis_brandtii_Satb2_10019975 I 0.000
SATB2 Myotis lucifugus ENSMLUG00000001554 I 0.000
SATB1 Myotis lucifugus ENSMLUG00000001860 I 0.000
ENSNLEG00000000912 Nomascus leucogenys ENSNLEG00000000912 I 0.000
ENSNLEG00000006893 Nomascus leucogenys ENSNLEG00000006893 I 0.000
SATB2 Ochotona princeps ENSOPRG00000003979 I 0.000
Ogr08410 Ophisaurus gracilis Ogr08410 I 0.000
Ogr08679 Ophisaurus gracilis Ogr08679 I 0.000
ENSONIG00000008688 Oreochromis niloticus ENSONIG00000008688 I 0.000
ENSONIG00000013780 Oreochromis niloticus ENSONIG00000013780 I 0.000
ENSONIG00000015271 Oreochromis niloticus ENSONIG00000015271 I 0.000
ENSOANG00000004992 Ornithorhynchus anatinus ENSOANG00000004992 I 0.000
SATB1 Oryctolagus cuniculus ENSOCUG00000007174 I 0.000
SATB2 Oryctolagus cuniculus ENSOCUG00000009700 I 0.000
SATB2 Otolemur garnettii ENSOGAG00000006949 I 0.000
SATB1 Otolemur garnettii ENSOGAG00000015441 I 0.000
ENSOARG00000015604 Ovis aries ENSOARG00000015604 I 0.000
ENSOARG00000015783 Ovis aries ENSOARG00000015783 I 0.000
SATB2 Pan troglodytes ENSPTRG00000012779 I 0.000
SATB1 Pan troglodytes ENSPTRG00000014677 I 0.000
ENSPANG00000011212 Papio anubis ENSPANG00000011212 I 0.000
ENSPSIG00000018044 Pelodiscus sinensis ENSPSIG00000018044 I 0.000
ENSPMAG00000005314 Petromyzon marinus ENSPMAG00000005314 I 0.000
ENSPFOG00000000642 Poecilia formosa ENSPFOG00000000642 I 0.000
ENSPFOG00000003900 Poecilia formosa ENSPFOG00000003900 I 0.000
ENSPFOG00000004509 Poecilia formosa ENSPFOG00000004509 I 0.000
ENSPFOG00000005488 Poecilia formosa ENSPFOG00000005488 I 0.000
Pvit_10645 Pogona vitticeps Pvit_10645 I 0.000
Pvit_16605 Pogona vitticeps Pvit_16605 I 0.000
ENSPPYG00000013052 Pongo abelii ENSPPYG00000013052 I 0.000
ENSPPYG00000014077 Pongo abelii ENSPPYG00000014077 I 0.000
SATB1 Procavia capensis ENSPCAG00000008567 I 0.000
SATB2 Procavia capensis ENSPCAG00000012822 I 0.000
SATB2 Pteropus vampyrus ENSPVAG00000012029 I 0.000
Satb2 Rattus norvegicus ENSRNOG00000010188 I 0.000
Satb1 Rattus norvegicus ENSRNOG00000012942 I 0.000
ENSSHAG00000011077 Sarcophilus harrisii ENSSHAG00000011077 I 0.000
ENSSHAG00000015368 Sarcophilus harrisii ENSSHAG00000015368 I 0.000
SATB2 Sorex araneus ENSSARG00000014343 I 0.000
SATB1 Sus scrofa ENSSSCG00000011201 I 0.000
SATB1 Taeniopygia guttata ENSTGUG00000003198 I 0.000
SATB2 Taeniopygia guttata ENSTGUG00000010480 I 0.000
satb2 Takifugu rubripes ENSTRUG00000005073 I 0.000
SATB2 Takifugu rubripes ENSTRUG00000015384 I 0.000
ENSTSYG00000005284 Tarsius syrichta ENSTSYG00000005284 I 0.000
SATB2 Tetraodon nigroviridis ENSTNIG00000005271 I 0.000
satb1b Tetraodon nigroviridis ENSTNIG00000011663 I 0.000
satb2 Tetraodon nigroviridis ENSTNIG00000014467 I 0.000
SATB2 Tupaia belangeri ENSTBEG00000002443 I 0.000
SATB1 Tursiops truncatus ENSTTRG00000006209 I 0.000
Tal_R006309 Tyto alba Tal_R006309 I 0.000
satb2 Xenopus tropicalis XB-GENE-5822252 I 0.000
satb1 Xenopus tropicalis XB-GENE-854103 I 0.000
ENSXMAG00000000865 Xiphophorus maculatus ENSXMAG00000000865 I 0.000
ENSXMAG00000004215 Xiphophorus maculatus ENSXMAG00000004215 I 0.000
ENSXMAG00000007412 Xiphophorus maculatus ENSXMAG00000007412 I 0.000
ENSXMAG00000018662 Xiphophorus maculatus ENSXMAG00000018662 I 0.000